Variant report

Variant	rs28504100
Chromosome Location	chr8:130560855-130560856
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:45915137..45916135-chr8:130560424..130560996,2	NB4	blood:
2	chr7:99005972..99006720-chr8:130560450..130561229,2	NB4	blood:
3	chr6:74230274..74231186-chr8:130560043..130560950,2	NB4	blood:
4	chr8:130560404..130562834-chr8:130584405..130585916,2	K562	blood:
5	chr8:130550430..130553918-chr8:130558468..130561396,4	K562	blood:
6	chr11:62608816..62609632-chr8:130560349..130560945,2	NB4	blood:

Variant related genes	Relation type
ENSG00000106244	Chromatin interaction
ENSG00000106245	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000170919	Chromatin interaction
ENSG00000156508	Chromatin interaction
ENSG00000133112	Chromatin interaction

rs_ID	r²[population]
rs10505543	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16904091	1.00[EUR][1000 genomes]
rs16904096	1.00[EUR][1000 genomes]
rs16904100	1.00[EUR][1000 genomes]
rs16904107	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16904111	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2395929	1.00[EUR][1000 genomes]
rs28649960	1.00[EUR][1000 genomes]
rs56091718	1.00[EUR][1000 genomes]
rs56150381	1.00[EUR][1000 genomes]
rs57429183	1.00[EUR][1000 genomes]
rs57780119	1.00[EUR][1000 genomes]
rs58076733	1.00[EUR][1000 genomes]
rs58257572	1.00[EUR][1000 genomes]
rs58703070	1.00[EUR][1000 genomes]
rs58808349	1.00[EUR][1000 genomes]
rs59080393	1.00[EUR][1000 genomes]
rs59118615	1.00[EUR][1000 genomes]
rs59470088	1.00[EUR][1000 genomes]
rs60985401	1.00[EUR][1000 genomes]
rs61349896	1.00[EUR][1000 genomes]
rs6986342	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73710412	1.00[EUR][1000 genomes]
rs73710415	1.00[EUR][1000 genomes]
rs73710420	1.00[EUR][1000 genomes]
rs73710432	1.00[EUR][1000 genomes]
rs73710434	1.00[EUR][1000 genomes]
rs73710435	1.00[EUR][1000 genomes]
rs7833978	1.00[EUR][1000 genomes]

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130555400-130561600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr8:130556800-130568000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr8:130557800-130561200	Enhancers	Thymus	Thymus
4	chr8:130557800-130561200	Flanking Active TSS	GM12878-XiMat	blood
5	chr8:130557800-130568600	Genic enhancers	K562	blood
6	chr8:130558000-130562600	Enhancers	Primary hematopoietic stem cells	blood
7	chr8:130558200-130561000	Enhancers	Fetal Thymus	thymus
8	chr8:130558200-130563000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr8:130558200-130564200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr8:130558200-130564600	Enhancers	Primary B cells from peripheral blood	blood
11	chr8:130558400-130561200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr8:130558600-130563000	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr8:130559200-130564400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr8:130559400-130563400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr8:130560000-130564000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr8:130560000-130564000	Weak transcription	Brain Hippocampus Middle	brain
17	chr8:130560200-130564000	Enhancers	Primary B cells from cord blood	blood
18	chr8:130560400-130564600	Genic enhancers	Dnd41	blood
19	chr8:130560400-130565400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr8:130560600-130561000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr8:130560800-130561000	Enhancers	Left Ventricle	heart
22	chr8:130560800-130562400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr8:130560800-130565000	Enhancers	Liver	Liver

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