Variant report

Variant	rs59080393
Chromosome Location	chr8:130428873-130428874
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10505543	1.00[EUR][1000 genomes]
rs16904091	1.00[EUR][1000 genomes]
rs16904096	1.00[EUR][1000 genomes]
rs16904100	1.00[EUR][1000 genomes]
rs16904107	1.00[EUR][1000 genomes]
rs16904111	1.00[EUR][1000 genomes]
rs2395929	1.00[EUR][1000 genomes]
rs28504100	1.00[EUR][1000 genomes]
rs28649960	1.00[EUR][1000 genomes]
rs57429183	1.00[EUR][1000 genomes]
rs57780119	1.00[EUR][1000 genomes]
rs58076733	1.00[EUR][1000 genomes]
rs58257572	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58808349	1.00[EUR][1000 genomes]
rs59118615	1.00[EUR][1000 genomes]
rs59470088	1.00[EUR][1000 genomes]
rs60985401	1.00[EUR][1000 genomes]
rs61349896	1.00[EUR][1000 genomes]
rs6986342	1.00[EUR][1000 genomes]
rs7832460	1.00[EUR][1000 genomes]
rs7833978	1.00[EUR][1000 genomes]
rs7843635	1.00[EUR][1000 genomes]
rs9693399	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429942	chr8:130397818-130460011	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv6394	chr8:130421502-130446035	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130410200-130434600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:130426600-130430800	Genic enhancers	K562	blood
3	chr8:130427000-130449000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:130427400-130429400	Flanking Active TSS	Dnd41	blood
5	chr8:130427600-130429000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:130428000-130429800	Active TSS	Thymus	Thymus
7	chr8:130428000-130432800	Weak transcription	Adipose Nuclei	Adipose
8	chr8:130428400-130430200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr8:130428400-130430200	Active TSS	Fetal Thymus	thymus
10	chr8:130428400-130430400	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr8:130428400-130432400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr8:130428600-130431000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr8:130428600-130432800	Weak transcription	GM12878-XiMat	blood
14	chr8:130428800-130429000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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