Variant report

Variant	rs58257572
Chromosome Location	chr8:130424745-130424746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10505543	1.00[EUR][1000 genomes]
rs16904091	1.00[EUR][1000 genomes]
rs16904096	1.00[EUR][1000 genomes]
rs16904100	1.00[EUR][1000 genomes]
rs16904107	1.00[EUR][1000 genomes]
rs16904111	1.00[EUR][1000 genomes]
rs2395929	1.00[EUR][1000 genomes]
rs28504100	1.00[EUR][1000 genomes]
rs28649960	1.00[EUR][1000 genomes]
rs57429183	1.00[EUR][1000 genomes]
rs57780119	1.00[EUR][1000 genomes]
rs58076733	1.00[EUR][1000 genomes]
rs58808349	1.00[EUR][1000 genomes]
rs59080393	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59118615	1.00[EUR][1000 genomes]
rs59470088	1.00[EUR][1000 genomes]
rs60985401	1.00[EUR][1000 genomes]
rs61349896	1.00[EUR][1000 genomes]
rs6986342	1.00[EUR][1000 genomes]
rs7832460	1.00[EUR][1000 genomes]
rs7833978	1.00[EUR][1000 genomes]
rs7843635	1.00[EUR][1000 genomes]
rs9693399	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429942	chr8:130397818-130460011	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv6394	chr8:130421502-130446035	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130410200-130434600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:130416800-130426600	Strong transcription	K562	blood
3	chr8:130419800-130425800	Weak transcription	Fetal Thymus	thymus
4	chr8:130419800-130427000	Weak transcription	Thymus	Thymus
5	chr8:130423600-130425000	Enhancers	Fetal Heart	heart
6	chr8:130423600-130425000	Enhancers	Fetal Stomach	stomach
7	chr8:130424000-130425800	Enhancers	Dnd41	blood
8	chr8:130424200-130426400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr8:130424200-130427600	Weak transcription	GM12878-XiMat	blood
10	chr8:130424400-130426600	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr8:130424600-130426600	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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