Variant report

Variant	rs73715269
Chromosome Location	chr7:111461754-111461755
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:111459645..111462383-chr7:111465002..111466906,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF277-1	chr7:111459434-111461829	ENSG00000225572.1
2	lnc-ZNF277-1	chr7:111459434-111461835	NONHSAT122774

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11978729	1.00[EUR][1000 genomes]
rs11981927	1.00[EUR][1000 genomes]
rs17159114	1.00[EUR][1000 genomes]
rs3213630	1.00[EUR][1000 genomes]
rs3213632	1.00[EUR][1000 genomes]
rs3801780	1.00[EUR][1000 genomes]
rs56683533	1.00[EUR][1000 genomes]
rs58250389	1.00[EUR][1000 genomes]
rs73432091	1.00[EUR][1000 genomes]
rs73432092	1.00[EUR][1000 genomes]
rs73432093	1.00[EUR][1000 genomes]
rs73432094	1.00[EUR][1000 genomes]
rs73432100	1.00[EUR][1000 genomes]
rs73434213	1.00[EUR][1000 genomes]
rs7778290	1.00[EUR][1000 genomes]
rs7778293	1.00[EUR][1000 genomes]
rs7778482	1.00[EUR][1000 genomes]
rs7778607	1.00[EUR][1000 genomes]
rs7778675	1.00[EUR][1000 genomes]
rs7778828	1.00[EUR][1000 genomes]
rs7801388	1.00[EUR][1000 genomes]
rs7809882	1.00[EUR][1000 genomes]
rs9918593	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608196	chr7:111073710-111794368	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv869375	chr7:111105151-111470811	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv608215	chr7:111183610-111533520	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1021527	chr7:111194596-111851619	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv539086	chr7:111194596-111851619	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv1028740	chr7:111227747-111679401	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv1015267	chr7:111303294-111714771	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv539087	chr7:111303294-111714771	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv539088	chr7:111333899-111722341	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv531435	chr7:111333900-111926292	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
11	nsv491934	chr7:111333900-111975504	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	nsv532335	chr7:111411990-112054905	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
13	nsv5901	chr7:111428283-111472968	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:111436200-111468200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr7:111441400-111472000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:111441600-111488400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:111442600-111486000	Weak transcription	Colon Smooth Muscle	Colon
5	chr7:111442800-111462400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:111442800-111472200	Weak transcription	Fetal Stomach	stomach
7	chr7:111443600-111467400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr7:111443600-111468200	Weak transcription	NH-A	brain
9	chr7:111443600-111471400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:111443800-111462800	Weak transcription	HSMMtube	muscle
11	chr7:111443800-111468000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:111443800-111468000	Weak transcription	NHEK	skin
13	chr7:111444000-111486400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr7:111444200-111482600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr7:111444400-111475000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr7:111444400-111484800	Weak transcription	HepG2	liver
17	chr7:111446400-111472000	Weak transcription	Fetal Brain Female	brain
18	chr7:111447200-111472200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr7:111448000-111472000	Weak transcription	NHLF	lung
20	chr7:111449400-111463800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr7:111449400-111476800	Weak transcription	Psoas Muscle	Psoas
22	chr7:111449600-111462200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr7:111449600-111463400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr7:111449600-111481800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:111449600-111500600	Weak transcription	Fetal Kidney	kidney
26	chr7:111453400-111470200	Weak transcription	Esophagus	oesophagus
27	chr7:111457800-111461800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr7:111458000-111464000	Strong transcription	HUVEC	blood vessel
29	chr7:111458600-111462800	Strong transcription	Liver	Liver
30	chr7:111458600-111482600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr7:111458800-111462600	Strong transcription	Adipose Nuclei	Adipose
32	chr7:111458800-111463200	Strong transcription	Fetal Lung	lung
33	chr7:111459200-111472000	Weak transcription	Brain Angular Gyrus	brain
34	chr7:111459200-111480400	Weak transcription	Brain Cingulate Gyrus	brain
35	chr7:111459400-111461800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr7:111459600-111462400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr7:111460000-111463000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr7:111460000-111467000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr7:111460200-111462000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr7:111460200-111462200	Strong transcription	Brain Anterior Caudate	brain
41	chr7:111460200-111462200	Strong transcription	Ovary	ovary
42	chr7:111460200-111486000	Weak transcription	Fetal Muscle Leg	muscle
43	chr7:111460200-111488800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr7:111460400-111462600	Strong transcription	Brain Hippocampus Middle	brain
45	chr7:111460600-111461800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr7:111460600-111461800	Strong transcription	Brain Inferior Temporal Lobe	brain
47	chr7:111460600-111482400	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr7:111460800-111491800	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr7:111461000-111462600	Strong transcription	Stomach Smooth Muscle	stomach
50	chr7:111461000-111462800	Strong transcription	Left Ventricle	heart

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