Variant report

Variant	rs73716277
Chromosome Location	chr7:117465718-117465719
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17140441	0.82[AFR][1000 genomes]
rs34577885	1.00[AMR][1000 genomes]
rs35750538	0.82[AFR][1000 genomes]
rs58929081	1.00[AMR][1000 genomes]
rs59458875	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60320365	1.00[AMR][1000 genomes]
rs60482411	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61112731	1.00[AMR][1000 genomes]
rs61689363	1.00[AMR][1000 genomes]
rs6971315	1.00[AMR][1000 genomes]
rs73473623	1.00[AMR][1000 genomes]
rs73473631	1.00[AMR][1000 genomes]
rs73475488	1.00[AMR][1000 genomes]
rs73716254	1.00[AMR][1000 genomes]
rs73716257	1.00[AMR][1000 genomes]
rs73716362	1.00[AMR][1000 genomes]
rs73716363	1.00[AMR][1000 genomes]
rs73716371	1.00[AMR][1000 genomes]
rs73716373	1.00[AMR][1000 genomes]
rs7800091	1.00[AMR][1000 genomes]
rs7800204	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117449000-117467200	Weak transcription	Fetal Brain Female	brain
2	chr7:117455200-117467400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr7:117456600-117478200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:117459400-117467200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr7:117460000-117474800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:117460400-117467400	Weak transcription	Fetal Lung	lung
7	chr7:117463800-117469400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr7:117464000-117467600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:117464000-117468400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr7:117464200-117469400	Weak transcription	Brain Germinal Matrix	brain
11	chr7:117464400-117470400	Enhancers	Brain Cingulate Gyrus	brain
12	chr7:117464600-117466200	Enhancers	Fetal Brain Male	brain
13	chr7:117464600-117466200	Enhancers	NHLF	lung
14	chr7:117464600-117469600	Enhancers	Brain Hippocampus Middle	brain
15	chr7:117464600-117470200	Enhancers	Brain Anterior Caudate	brain
16	chr7:117464600-117470200	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr7:117464600-117471800	Enhancers	Brain Substantia Nigra	brain
18	chr7:117465000-117466200	Enhancers	Brain Angular Gyrus	brain
19	chr7:117465000-117466200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr7:117465000-117466400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr7:117465200-117465800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr7:117465200-117465800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr7:117465200-117466200	Enhancers	Fetal Heart	heart
24	chr7:117465200-117467200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr7:117465400-117466200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr7:117465600-117467600	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr7:117465600-117467800	Weak transcription	NH-A	brain
28	chr7:117465600-117467800	Weak transcription	NHDF-Ad	bronchial
29	chr7:117465600-117468400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr7:117465600-117473200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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