Variant report
| Variant | rs73716373 |
|---|---|
| Chromosome Location | chr7:117544077-117544078 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 7:115847372-115857098..7:117542187-117544952 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000135269 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs34577885 | 1.00[AMR][1000 genomes] |
| rs58929081 | 1.00[AMR][1000 genomes] |
| rs59458875 | 1.00[AMR][1000 genomes] |
| rs60320365 | 1.00[AMR][1000 genomes] |
| rs60482411 | 1.00[AMR][1000 genomes] |
| rs61112731 | 1.00[AMR][1000 genomes] |
| rs61689363 | 1.00[AMR][1000 genomes] |
| rs6971315 | 1.00[AMR][1000 genomes] |
| rs73473623 | 1.00[AMR][1000 genomes] |
| rs73473631 | 1.00[AMR][1000 genomes] |
| rs73475488 | 1.00[AMR][1000 genomes] |
| rs73716254 | 1.00[AMR][1000 genomes] |
| rs73716257 | 1.00[AMR][1000 genomes] |
| rs73716277 | 1.00[AMR][1000 genomes] |
| rs73716362 | 1.00[AMR][1000 genomes] |
| rs73716363 | 1.00[AMR][1000 genomes] |
| rs73716371 | 1.00[AMR][1000 genomes] |
| rs7800091 | 1.00[AMR][1000 genomes] |
| rs7800204 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869971 | chr7:117420583-118274149 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 40 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:117543000-117547400 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
