Variant report

Variant	rs73717359
Chromosome Location	chr7:121128226-121128227
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12538669	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12539623	0.87[AFR][1000 genomes]
rs59345057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59465771	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717345	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7803325	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7809121	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025430	chr7:120638930-121179289	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1026322	chr7:120841937-121188037	Weak transcription Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv539102	chr7:120841937-121188037	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv1032054	chr7:120926379-121432971	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv539103	chr7:120926379-121432971	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv428507	chr7:121037303-121191934	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1029156	chr7:121069455-121143942	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv539104	chr7:121069455-121143942	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121121200-121129200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:121122200-121128400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr7:121123000-121128400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:121123400-121128600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr7:121126000-121136200	Weak transcription	Right Atrium	heart
6	chr7:121126000-121145200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:121126200-121144400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:121126400-121134200	Weak transcription	Osteobl	bone
9	chr7:121127000-121128400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr7:121128200-121128400	Flanking Active TSS	HUVEC	blood vessel
11	chr7:121128200-121128600	Enhancers	Fetal Intestine Small	intestine
12	chr7:121128200-121128600	Enhancers	NHDF-Ad	bronchial
13	chr7:121128200-121129800	Enhancers	Duodenum Mucosa	Duodenum
14	chr7:121128200-121130200	Enhancers	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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