Variant report

Variant	rs7809121
Chromosome Location	chr7:121119275-121119276
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12538669	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12539623	0.98[AFR][1000 genomes]
rs59345057	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59465771	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717345	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717357	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717359	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717360	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717361	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717362	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7803325	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025430	chr7:120638930-121179289	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1026322	chr7:120841937-121188037	Weak transcription Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv539102	chr7:120841937-121188037	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv1032054	chr7:120926379-121432971	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv539103	chr7:120926379-121432971	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv428507	chr7:121037303-121191934	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1029156	chr7:121069455-121143942	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv539104	chr7:121069455-121143942	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121116200-121119400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:121118400-121119800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:121118600-121119600	Weak transcription	Stomach Mucosa	stomach
4	chr7:121118800-121121400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:121119000-121120200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr7:121119200-121119400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:121119200-121119400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr7:121119200-121119400	Enhancers	Fetal Brain Male	brain
9	chr7:121119200-121120200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr7:121119200-121120200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr7:121119200-121121600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr7:121119200-121121800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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