Variant report

Variant	rs7371865
Chromosome Location	chr3:46549188-46549189
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17288483	1.00[AFR][1000 genomes]
rs62242981	1.00[AFR][1000 genomes]
rs6441976	1.00[AFR][1000 genomes]
rs6441993	1.00[AFR][1000 genomes]
rs7615975	1.00[AFR][1000 genomes]
rs7644995	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014624	chr3:46463424-46549188	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46537200-46550200	Enhancers	K562	blood
2	chr3:46541000-46557600	Weak transcription	Left Ventricle	heart
3	chr3:46541000-46580200	Weak transcription	Fetal Heart	heart
4	chr3:46541200-46562200	Weak transcription	Right Ventricle	heart
5	chr3:46544800-46556000	Weak transcription	Psoas Muscle	Psoas
6	chr3:46544800-46599400	Weak transcription	Right Atrium	heart
7	chr3:46545400-46551200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr3:46545600-46558000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:46545600-46559200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr3:46547000-46549400	Weak transcription	Fetal Thymus	thymus
11	chr3:46547400-46552600	Weak transcription	HSMMtube	muscle
12	chr3:46548200-46549400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr3:46548200-46553000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr3:46548600-46549200	Enhancers	H9 Cell Line	embryonic stem cell
15	chr3:46548800-46549200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr3:46549000-46549200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr3:46549000-46549400	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr3:46549000-46549600	Enhancers	H1 Cell Line	embryonic stem cell
19	chr3:46549000-46549600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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