Variant report

Variant	rs73719810
Chromosome Location	chr6:4565862-4565863
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11962071	0.95[EUR][1000 genomes]
rs11962707	0.95[EUR][1000 genomes]
rs17138491	1.00[EUR][1000 genomes]
rs55707514	0.95[EUR][1000 genomes]
rs55716151	0.90[EUR][1000 genomes]
rs61626939	0.95[EUR][1000 genomes]
rs73717395	1.00[EUR][1000 genomes]
rs73717396	1.00[EUR][1000 genomes]
rs73717398	1.00[EUR][1000 genomes]
rs73717400	0.95[EUR][1000 genomes]
rs73717401	1.00[EUR][1000 genomes]
rs73719818	0.95[EUR][1000 genomes]
rs73719819	0.95[EUR][1000 genomes]
rs73719820	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3421990	chr6:4446933-4659639	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830576	chr6:4447554-4610604	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv883415	chr6:4546491-4629654	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4560000-4572400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:4562600-4566200	Enhancers	Fetal Muscle Leg	muscle
3	chr6:4563600-4566400	Weak transcription	NHEK	skin
4	chr6:4563800-4566800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:4564000-4577800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:4564400-4566000	Enhancers	Brain Germinal Matrix	brain
7	chr6:4564600-4566200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:4564800-4566000	Enhancers	Placenta	Placenta
9	chr6:4565000-4566000	Enhancers	Brain Anterior Caudate	brain
10	chr6:4565000-4566000	Enhancers	Stomach Smooth Muscle	stomach
11	chr6:4565000-4568600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:4565200-4566000	Enhancers	Colon Smooth Muscle	Colon
13	chr6:4565200-4566400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:4565600-4566400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:4565600-4566600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:4565800-4568000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:4565800-4568000	Weak transcription	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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