Variant report

Variant	rs61626939
Chromosome Location	chr6:4555746-4555747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11962071	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11962707	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11963606	0.91[ASN][1000 genomes]
rs17138481	0.98[ASN][1000 genomes]
rs17138491	0.95[EUR][1000 genomes]
rs17138531	0.94[ASN][1000 genomes]
rs2016920	0.98[ASN][1000 genomes]
rs382186	0.86[ASN][1000 genomes]
rs410662	0.80[ASN][1000 genomes]
rs420580	0.86[ASN][1000 genomes]
rs55707514	0.90[EUR][1000 genomes]
rs55716151	0.85[EUR][1000 genomes]
rs58440707	0.95[ASN][1000 genomes]
rs58901337	0.94[ASN][1000 genomes]
rs59123449	0.92[ASN][1000 genomes]
rs59668969	0.98[ASN][1000 genomes]
rs61693763	0.86[ASN][1000 genomes]
rs73359389	0.98[ASN][1000 genomes]
rs73717395	0.95[EUR][1000 genomes]
rs73717396	0.95[EUR][1000 genomes]
rs73717398	0.95[EUR][1000 genomes]
rs73717400	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73717401	0.95[EUR][1000 genomes]
rs73719810	0.95[EUR][1000 genomes]
rs73719818	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73719819	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73719820	0.95[EUR][1000 genomes]
rs73719822	0.92[ASN][1000 genomes]
rs7747007	0.86[ASN][1000 genomes]
rs7751465	0.97[ASN][1000 genomes]
rs7755263	0.98[ASN][1000 genomes]
rs7764506	0.98[ASN][1000 genomes]
rs7768719	0.98[ASN][1000 genomes]
rs84996	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3421990	chr6:4446933-4659639	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830576	chr6:4447554-4610604	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv883415	chr6:4546491-4629654	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4546800-4559600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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