Variant report

Variant	rs61693763
Chromosome Location	chr6:4600477-4600478
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RPP40-3	chr6:4599528-4601387	NONHSAT107457
2	lnc-CDYL-11	chr6:4599758-4600589	NONHSAT107458

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11962071	0.92[ASN][1000 genomes]
rs11962707	0.91[ASN][1000 genomes]
rs11963606	0.92[ASN][1000 genomes]
rs17138481	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17138531	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2016920	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4140436	1.00[EUR][1000 genomes]
rs58440707	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58819824	1.00[EUR][1000 genomes]
rs58901337	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59123449	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59130603	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59668969	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61626939	0.86[ASN][1000 genomes]
rs73359389	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73717400	0.86[ASN][1000 genomes]
rs73719818	0.91[ASN][1000 genomes]
rs73719819	0.91[ASN][1000 genomes]
rs73719822	0.91[ASN][1000 genomes]
rs7751465	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7755263	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7764506	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7768719	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9504163	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3421990	chr6:4446933-4659639	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830576	chr6:4447554-4610604	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv883415	chr6:4546491-4629654	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4597400-4601000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:4598400-4601400	Enhancers	HUVEC	blood vessel
3	chr6:4599800-4601400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:4599800-4601600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:4599800-4604000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:4599800-4604400	Enhancers	NHEK	skin
7	chr6:4600000-4601200	Enhancers	Fetal Heart	heart
8	chr6:4600000-4601200	Enhancers	Placenta	Placenta
9	chr6:4600000-4601400	Enhancers	Hela-S3	cervix
10	chr6:4600000-4601400	Enhancers	NH-A	brain
11	chr6:4600000-4604400	Enhancers	HMEC	breast
12	chr6:4600000-4606800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr6:4600200-4600600	Enhancers	A549	lung
14	chr6:4600200-4600800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:4600200-4601200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:4600200-4601200	Enhancers	Osteobl	bone
17	chr6:4600200-4601400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:4600200-4601400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr6:4600200-4602000	Enhancers	HSMM	muscle
20	chr6:4600200-4602000	Enhancers	NHLF	lung
21	chr6:4600200-4602200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:4600400-4601400	Enhancers	Placenta Amnion	Placenta Amnion
23	chr6:4600400-4601800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:4600400-4601800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:4600400-4601800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:4600400-4604400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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