Variant report
| Variant | rs7755263 |
|---|---|
| Chromosome Location | chr6:4561055-4561056 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:4557846..4559701-chr6:4560339..4563228,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs11962071 | 0.95[ASN][1000 genomes] |
| rs11962707 | 0.94[ASN][1000 genomes] |
| rs11963606 | 0.92[ASN][1000 genomes] |
| rs17138481 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17138531 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2016920 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs382186 | 0.85[ASN][1000 genomes] |
| rs4140436 | 1.00[EUR][1000 genomes] |
| rs420580 | 0.85[ASN][1000 genomes] |
| rs58440707 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs58819824 | 1.00[EUR][1000 genomes] |
| rs58901337 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs59123449 | 1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs59130603 | 1.00[EUR][1000 genomes] |
| rs59668969 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61626939 | 0.98[ASN][1000 genomes] |
| rs61693763 | 1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs73359389 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73717400 | 0.98[ASN][1000 genomes] |
| rs73719818 | 0.97[ASN][1000 genomes] |
| rs73719819 | 0.97[ASN][1000 genomes] |
| rs73719822 | 0.94[ASN][1000 genomes] |
| rs7747007 | 0.85[ASN][1000 genomes] |
| rs7751465 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7764506 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7768719 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs84996 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3421990 | chr6:4446933-4659639 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv830576 | chr6:4447554-4610604 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | esv3366530 | chr6:4471528-4865322 | ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 4 | nsv883415 | chr6:4546491-4629654 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:4560000-4572400 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
