Variant report
| Variant | rs382186 |
|---|---|
| Chromosome Location | chr6:4555969-4555970 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:4510973..4512545-chr6:4553397..4556208,2 | K562 | blood: |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CDYL-13 | chr6:4555845-4556045 | ucscGeneNc_uc010jns_1 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs11962071 | 0.81[ASN][1000 genomes] |
| rs17138481 | 0.85[ASN][1000 genomes] |
| rs17138527 | 0.86[EUR][1000 genomes] |
| rs17138531 | 0.81[ASN][1000 genomes] |
| rs17138543 | 0.85[EUR][1000 genomes] |
| rs2016920 | 0.85[ASN][1000 genomes] |
| rs2235726 | 0.86[EUR][1000 genomes] |
| rs2235727 | 0.86[EUR][1000 genomes] |
| rs410662 | 0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs420580 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4959306 | 0.86[EUR][1000 genomes] |
| rs4960005 | 0.82[EUR][1000 genomes] |
| rs58440707 | 0.82[ASN][1000 genomes] |
| rs58901337 | 0.81[ASN][1000 genomes] |
| rs59668969 | 0.85[ASN][1000 genomes] |
| rs61626939 | 0.86[ASN][1000 genomes] |
| rs73359389 | 0.85[ASN][1000 genomes] |
| rs73717400 | 0.86[ASN][1000 genomes] |
| rs73719818 | 0.82[ASN][1000 genomes] |
| rs73719819 | 0.82[ASN][1000 genomes] |
| rs7747007 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7751465 | 0.83[ASN][1000 genomes] |
| rs7755263 | 0.85[ASN][1000 genomes] |
| rs7764506 | 0.85[ASN][1000 genomes] |
| rs7768719 | 0.85[ASN][1000 genomes] |
| rs84996 | 0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9502202 | 0.86[EUR][1000 genomes] |
| rs9504152 | 0.93[EUR][1000 genomes] |
| rs9504154 | 0.88[EUR][1000 genomes] |
| rs9504163 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3421990 | chr6:4446933-4659639 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv830576 | chr6:4447554-4610604 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | esv3366530 | chr6:4471528-4865322 | ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 4 | nsv883415 | chr6:4546491-4629654 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:4546800-4559600 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
