Variant report

Variant	rs9504152
Chromosome Location	chr6:4581322-4581323
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11751457	1.00[ASN][1000 genomes]
rs11756102	1.00[CEU][hapmap]
rs11962754	1.00[ASN][1000 genomes]
rs11964426	1.00[CEU][hapmap]
rs17138527	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17138534	0.91[ASN][1000 genomes]
rs17138543	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2143455	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2235724	1.00[ASN][1000 genomes]
rs2235726	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2235727	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs377207	1.00[ASN][1000 genomes]
rs378901	1.00[ASN][1000 genomes]
rs382186	0.93[EUR][1000 genomes]
rs385236	1.00[ASN][1000 genomes]
rs385884	1.00[ASN][1000 genomes]
rs390126	1.00[ASN][1000 genomes]
rs390617	1.00[ASN][1000 genomes]
rs400405	1.00[ASN][1000 genomes]
rs410662	0.85[EUR][1000 genomes]
rs413716	1.00[ASN][1000 genomes]
rs418563	1.00[ASN][1000 genomes]
rs420580	0.91[EUR][1000 genomes]
rs421930	1.00[ASN][1000 genomes]
rs424137	1.00[ASN][1000 genomes]
rs438021	1.00[ASN][1000 genomes]
rs453768	1.00[ASN][1000 genomes]
rs4959306	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4960004	1.00[ASN][1000 genomes]
rs4960005	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4960006	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs601192	1.00[ASN][1000 genomes]
rs62384944	0.91[ASN][1000 genomes]
rs6911463	1.00[CEU][hapmap]
rs6913171	1.00[ASN][1000 genomes]
rs7747007	0.91[EUR][1000 genomes]
rs84996	0.97[EUR][1000 genomes]
rs9328261	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9328262	1.00[ASN][1000 genomes]
rs9392607	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9502199	1.00[ASN][1000 genomes]
rs9502200	1.00[ASN][1000 genomes]
rs9502202	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9502204	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9502205	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9502206	1.00[ASN][1000 genomes]
rs9504151	1.00[ASN][1000 genomes]
rs9504154	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9504156	1.00[ASN][1000 genomes]
rs9504159	0.91[ASN][1000 genomes]
rs9504160	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9504165	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3421990	chr6:4446933-4659639	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830576	chr6:4447554-4610604	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv883415	chr6:4546491-4629654	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4568400-4581800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:4572600-4581800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:4574600-4582200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:4574800-4581800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr6:4578200-4581400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:4578200-4581400	Weak transcription	Osteobl	bone
7	chr6:4578200-4581600	Weak transcription	Adipose Nuclei	Adipose
8	chr6:4578200-4581800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:4578200-4582200	Weak transcription	A549	lung
10	chr6:4578400-4581600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:4578400-4581600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:4578400-4581600	Weak transcription	NH-A	brain
13	chr6:4578400-4581800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:4578400-4581800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr6:4578400-4581800	Weak transcription	Brain Substantia Nigra	brain
16	chr6:4578400-4581800	Weak transcription	NHDF-Ad	bronchial
17	chr6:4578400-4582000	Weak transcription	Brain Hippocampus Middle	brain
18	chr6:4578600-4581600	Weak transcription	NHLF	lung
19	chr6:4578600-4581800	Weak transcription	Fetal Heart	heart
20	chr6:4578600-4582400	Weak transcription	Brain Angular Gyrus	brain
21	chr6:4580400-4581800	Weak transcription	Placenta	Placenta
22	chr6:4580600-4581600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:4580600-4581600	Enhancers	Placenta Amnion	Placenta Amnion
24	chr6:4581200-4581600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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