Variant report
| Variant | rs73719952 |
|---|---|
| Chromosome Location | chr7:119205742-119205743 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr7:119205723-119205832 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000256882 | TF binding region |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10267600 | 0.83[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs11770085 | 0.80[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs12537312 | 0.80[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs12540739 | 0.81[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs28843793 | 0.83[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs28893249 | 0.83[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs4129182 | 0.84[EUR][1000 genomes] |
| rs4486113 | 0.83[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs4730924 | 0.83[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs5009239 | 0.80[EUR][1000 genomes] |
| rs6958096 | 0.83[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs6971212 | 0.80[EUR][1000 genomes] |
| rs73483305 | 0.83[EUR][1000 genomes];0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv889100 | chr7:118744450-119247571 | Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv889113 | chr7:119133195-119206096 | Enhancers Weak transcription | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1019377 | chr7:119164442-119233633 | Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1019921 | chr7:119166254-119233633 | Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv949327 | chr7:119179990-119402882 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 6 | esv3345886 | chr7:119204050-119225361 | Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Enhancers Weak transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
