Variant report

Variant	rs11770085
Chromosome Location	chr7:119236139-119236140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:119090628..119092465-chr7:119234986..119236766,2	K562	blood:

Extended variants
information (count: 143 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:136)

rs_ID	r²[population]
rs10233221	0.85[ASN][1000 genomes]
rs10239992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10245797	0.96[ASN][1000 genomes]
rs10246845	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10251920	0.92[ASN][1000 genomes]
rs10258423	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10266505	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10267600	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10267793	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10271355	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10273802	0.88[ASN][1000 genomes]
rs10274141	0.96[ASN][1000 genomes]
rs10275167	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10279052	0.85[ASN][1000 genomes]
rs10279203	0.88[ASN][1000 genomes]
rs10279364	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10500075	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10500077	0.88[ASN][1000 genomes]
rs11487119	0.81[ASN][1000 genomes]
rs11763158	0.88[ASN][1000 genomes]
rs11764108	0.88[ASN][1000 genomes]
rs11764197	0.88[ASN][1000 genomes]
rs11767407	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11771353	0.88[ASN][1000 genomes]
rs11771830	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11973192	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11978043	0.85[ASN][1000 genomes]
rs12536246	0.85[ASN][1000 genomes]
rs12537312	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12540739	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706258	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12706259	0.85[ASN][1000 genomes]
rs12706263	0.85[ASN][1000 genomes]
rs13239182	0.85[ASN][1000 genomes]
rs1357672	0.88[ASN][1000 genomes]
rs1404080	0.85[ASN][1000 genomes]
rs1404083	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1589754	0.88[ASN][1000 genomes]
rs17142284	0.88[ASN][1000 genomes]
rs17142302	0.88[ASN][1000 genomes]
rs17142311	0.88[ASN][1000 genomes]
rs17142315	0.85[ASN][1000 genomes]
rs17142320	0.85[ASN][1000 genomes]
rs17142326	0.85[ASN][1000 genomes]
rs17142336	0.88[ASN][1000 genomes]
rs17278994	0.88[ASN][1000 genomes]
rs17279126	0.88[ASN][1000 genomes]
rs17279575	0.88[ASN][1000 genomes]
rs17279645	0.88[ASN][1000 genomes]
rs17280552	0.88[ASN][1000 genomes]
rs17345578	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17345704	0.88[ASN][1000 genomes]
rs1810339	0.88[ASN][1000 genomes]
rs1916859	0.85[ASN][1000 genomes]
rs1916861	0.88[ASN][1000 genomes]
rs2049377	0.88[ASN][1000 genomes]
rs2049381	0.88[ASN][1000 genomes]
rs2177497	0.88[ASN][1000 genomes]
rs2402490	0.88[ASN][1000 genomes]
rs28843793	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28893249	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34943632	0.88[ASN][1000 genomes]
rs36054882	0.88[ASN][1000 genomes]
rs3857835	0.88[ASN][1000 genomes]
rs4129182	0.83[CEU][hapmap]
rs4132827	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4341091	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4486113	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4518596	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4617096	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4727897	0.96[ASN][1000 genomes]
rs4727901	0.96[ASN][1000 genomes]
rs4730924	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730929	0.92[ASN][1000 genomes]
rs4730930	0.96[ASN][1000 genomes]
rs4730933	0.96[ASN][1000 genomes]
rs4730935	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4730936	0.88[ASN][1000 genomes]
rs5009239	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56750874	0.85[ASN][1000 genomes]
rs57472313	0.88[ASN][1000 genomes]
rs58141692	0.96[ASN][1000 genomes]
rs58374970	0.88[ASN][1000 genomes]
rs60866751	0.84[ASN][1000 genomes]
rs61121232	0.88[ASN][1000 genomes]
rs62477384	0.92[ASN][1000 genomes]
rs6466707	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6466708	0.96[ASN][1000 genomes]
rs6466713	0.85[ASN][1000 genomes]
rs6466714	0.88[ASN][1000 genomes]
rs6943195	0.89[ASN][1000 genomes]
rs6944331	0.88[ASN][1000 genomes]
rs6946759	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6947105	0.85[ASN][1000 genomes]
rs6948585	0.88[ASN][1000 genomes]
rs6950247	0.88[ASN][1000 genomes]
rs6955486	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6955609	0.92[ASN][1000 genomes]
rs6958096	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6962153	0.88[ASN][1000 genomes]
rs6962613	0.88[ASN][1000 genomes]
rs6962888	0.88[ASN][1000 genomes]
rs6967604	0.88[ASN][1000 genomes]
rs6972621	0.88[ASN][1000 genomes]
rs6973035	0.88[ASN][1000 genomes]
rs6978098	0.85[ASN][1000 genomes]
rs73483305	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73483374	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73487162	0.85[ASN][1000 genomes]
rs73487163	0.85[ASN][1000 genomes]
rs73487176	0.85[ASN][1000 genomes]
rs73719952	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73720503	0.96[ASN][1000 genomes]
rs73722420	0.96[ASN][1000 genomes]
rs73722422	0.96[ASN][1000 genomes]
rs73722423	0.96[ASN][1000 genomes]
rs7777009	0.92[ASN][1000 genomes]
rs7778068	0.92[ASN][1000 genomes]
rs7779499	0.88[ASN][1000 genomes]
rs7779886	0.88[ASN][1000 genomes]
rs7782632	0.96[ASN][1000 genomes]
rs7784543	0.88[ASN][1000 genomes]
rs7784594	0.88[ASN][1000 genomes]
rs7789561	0.85[ASN][1000 genomes]
rs7791292	0.88[ASN][1000 genomes]
rs7796017	0.96[ASN][1000 genomes]
rs7799128	0.96[ASN][1000 genomes]
rs7799153	0.96[ASN][1000 genomes]
rs7799166	0.96[ASN][1000 genomes]
rs7804447	0.88[ASN][1000 genomes]
rs7808954	0.88[ASN][1000 genomes]
rs7810698	0.88[ASN][1000 genomes]
rs7811166	0.88[ASN][1000 genomes]
rs961361	0.88[ASN][1000 genomes]
rs9640790	0.85[ASN][1000 genomes]
rs9692075	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889100	chr7:118744450-119247571	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949327	chr7:119179990-119402882	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv889114	chr7:119206096-119440159	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv11548	chr7:119232822-119236164	Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv1020551	chr7:119232910-119292763	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
6	nsv981410	chr7:119233323-119236164	Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv970422	chr7:119233323-119244802	Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119234000-119236400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr7:119234600-119236200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr7:119234800-119236400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:119235600-119236200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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