Variant report

Variant	rs10246845
Chromosome Location	chr7:119255954-119255955
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10258423	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10267600	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10267793	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10271355	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10275167	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10279364	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11767407	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11770085	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12537312	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12540739	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28843793	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28893249	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4132827	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4341091	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4486113	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4518596	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4617096	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4730924	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs5009239	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58141692	0.80[AMR][1000 genomes]
rs6955486	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6958096	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73483305	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73483374	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73722422	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949327	chr7:119179990-119402882	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv889114	chr7:119206096-119440159	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1020551	chr7:119232910-119292763	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119254600-119257000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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