Variant report

Variant	rs4617096
Chromosome Location	chr7:119261874-119261875
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10239992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10245797	0.81[ASN][1000 genomes]
rs10246845	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10251920	0.94[AMR][1000 genomes]
rs10258423	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10266505	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10267600	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10267793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10271355	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10274141	0.81[ASN][1000 genomes]
rs10275167	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10279364	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10500075	0.81[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs11767407	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11770085	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11771830	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11973192	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12537312	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12540739	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12706258	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1404083	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs17345578	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28843793	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28893249	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4129182	0.81[CEU][hapmap]
rs4132827	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4341091	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4486113	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4518596	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4727897	0.81[ASN][1000 genomes]
rs4727901	0.81[ASN][1000 genomes]
rs4730924	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4730929	0.94[AMR][1000 genomes]
rs4730930	0.81[ASN][1000 genomes]
rs4730933	0.81[ASN][1000 genomes]
rs4730935	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5009239	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58141692	0.81[ASN][1000 genomes]
rs6466707	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6466708	0.81[ASN][1000 genomes]
rs6946759	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6955486	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6958096	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73483305	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73483374	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73720503	0.81[ASN][1000 genomes]
rs73722420	0.81[ASN][1000 genomes]
rs73722422	0.81[ASN][1000 genomes]
rs73722423	0.81[ASN][1000 genomes]
rs7782632	0.81[ASN][1000 genomes]
rs7796017	0.81[ASN][1000 genomes]
rs7799128	0.81[ASN][1000 genomes]
rs7799153	0.81[ASN][1000 genomes]
rs7799166	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949327	chr7:119179990-119402882	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv889114	chr7:119206096-119440159	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1020551	chr7:119232910-119292763	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4617096	GPR84	trans	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119259800-119262000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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