Variant report

Variant	rs7782632
Chromosome Location	chr7:119345880-119345881
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:119336359..119340346-chr7:119340435..119346652,6	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KCND2-2	chr7:119344514-119347011	NONHSAT122985

Extended variants
information (count: 237 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:223)

rs_ID	r²[population]
rs10081200	0.88[ASN][1000 genomes]
rs10233221	0.88[ASN][1000 genomes]
rs10239992	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10245797	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10251920	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10258423	0.81[ASN][1000 genomes]
rs10258725	0.88[ASN][1000 genomes]
rs10266505	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10267600	0.96[ASN][1000 genomes]
rs10267793	0.81[ASN][1000 genomes]
rs10271355	0.81[ASN][1000 genomes]
rs10273802	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10274141	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10275167	0.81[ASN][1000 genomes]
rs10279052	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10279203	0.92[ASN][1000 genomes]
rs10279364	0.81[ASN][1000 genomes]
rs10500075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10500077	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1099820	0.88[ASN][1000 genomes]
rs11487119	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11761345	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11763158	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11764046	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11764108	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11764197	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11766052	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11767175	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11767335	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11767407	0.81[ASN][1000 genomes]
rs11770085	0.96[ASN][1000 genomes]
rs11770087	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11770943	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11771353	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11771830	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11772195	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11973192	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11978043	0.88[ASN][1000 genomes]
rs12536246	0.88[ASN][1000 genomes]
rs12537312	0.96[ASN][1000 genomes]
rs12540739	0.96[ASN][1000 genomes]
rs12671360	0.88[ASN][1000 genomes]
rs12706258	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12706259	0.88[ASN][1000 genomes]
rs12706263	0.88[ASN][1000 genomes]
rs12706264	0.88[ASN][1000 genomes]
rs12706265	0.88[ASN][1000 genomes]
rs13239182	0.88[ASN][1000 genomes]
rs1357670	0.88[ASN][1000 genomes]
rs1357672	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1357674	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1404078	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1404080	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1404083	0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1524197	0.88[ASN][1000 genomes]
rs1524199	0.88[ASN][1000 genomes]
rs1524203	0.88[ASN][1000 genomes]
rs1524205	0.88[ASN][1000 genomes]
rs1581504	0.88[ASN][1000 genomes]
rs1589754	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1608585	0.88[ASN][1000 genomes]
rs17142284	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17142302	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17142311	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17142315	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17142320	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17142326	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17142336	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17278994	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17279126	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17279575	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17279645	0.95[AFR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17280552	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17280657	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17345578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17345704	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17518341	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17518502	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1810339	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1851806	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1916859	0.88[ASN][1000 genomes]
rs1916861	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1949781	0.88[ASN][1000 genomes]
rs2049377	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2049381	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2108143	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2140569	0.88[ASN][1000 genomes]
rs2177497	0.92[ASN][1000 genomes]
rs2402490	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2402491	0.88[ASN][1000 genomes]
rs28465102	0.88[ASN][1000 genomes]
rs28843793	0.96[ASN][1000 genomes]
rs28893249	0.96[ASN][1000 genomes]
rs34352135	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34943632	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36054882	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3857835	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4129182	1.00[YRI][hapmap]
rs4132827	0.81[ASN][1000 genomes]
rs4236612	0.88[ASN][1000 genomes]
rs4268068	0.93[AFR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4338036	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4341091	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4342531	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4398835	0.88[ASN][1000 genomes]
rs4486113	0.96[ASN][1000 genomes]
rs4518596	0.81[ASN][1000 genomes]
rs4617096	0.81[ASN][1000 genomes]
rs4644180	0.88[ASN][1000 genomes]
rs4727897	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4727901	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4727903	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4727904	0.88[ASN][1000 genomes]
rs4730924	0.96[ASN][1000 genomes]
rs4730929	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4730930	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730933	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4730936	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4730939	0.88[ASN][1000 genomes]
rs4730940	0.85[ASN][1000 genomes]
rs4730941	0.88[ASN][1000 genomes]
rs5009239	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs55897535	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56750874	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57408882	0.96[EUR][1000 genomes]
rs57472313	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57622763	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57899966	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57959404	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58141692	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58374970	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58440464	0.88[EUR][1000 genomes]
rs59561401	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59615990	0.88[ASN][1000 genomes]
rs60150709	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60741204	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60866751	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61121232	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62477384	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6466707	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6466708	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6466713	0.88[ASN][1000 genomes]
rs6466714	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6466717	0.88[ASN][1000 genomes]
rs6943195	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6944331	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6946759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6947105	0.88[ASN][1000 genomes]
rs6947172	0.88[ASN][1000 genomes]
rs6948585	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6949406	0.88[ASN][1000 genomes]
rs6950247	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6951577	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6955486	0.81[ASN][1000 genomes]
rs6955609	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6957872	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6958096	0.96[ASN][1000 genomes]
rs6961307	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6962153	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6962613	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6962888	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6967604	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6972621	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6973035	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6975347	1.00[EUR][1000 genomes]
rs6977777	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6978098	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73483305	0.96[ASN][1000 genomes]
rs73483374	0.81[ASN][1000 genomes]
rs73487162	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73487163	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73487176	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73720503	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73722420	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73722422	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73722423	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73723012	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73723013	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7777009	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7778068	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7779499	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7779886	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7780266	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7784543	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7784594	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7789561	0.88[ASN][1000 genomes]
rs7791292	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7793062	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7796017	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7797244	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7798013	0.88[CEU][hapmap];0.88[ASN][1000 genomes]
rs7799128	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7799153	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7799166	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7803264	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7804447	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7806056	0.88[ASN][1000 genomes]
rs7808597	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7808954	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7810563	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7810698	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7811166	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7811885	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs846420	0.85[ASN][1000 genomes]
rs846421	0.88[ASN][1000 genomes]
rs846424	0.88[ASN][1000 genomes]
rs846428	0.88[ASN][1000 genomes]
rs846431	0.88[ASN][1000 genomes]
rs846437	0.88[ASN][1000 genomes]
rs846438	0.88[ASN][1000 genomes]
rs846439	0.88[ASN][1000 genomes]
rs846441	0.88[ASN][1000 genomes]
rs846444	0.88[ASN][1000 genomes]
rs846445	0.88[ASN][1000 genomes]
rs846448	0.88[ASN][1000 genomes]
rs940412	0.81[ASN][1000 genomes]
rs961361	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9640790	0.88[ASN][1000 genomes]
rs9640791	0.88[ASN][1000 genomes]
rs9692075	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9801364	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9801367	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949327	chr7:119179990-119402882	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv889114	chr7:119206096-119440159	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv889115	chr7:119270386-119577292	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1029023	chr7:119292763-119606632	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1023813	chr7:119292763-119606803	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv524225	chr7:119293417-119606632	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1029841	chr7:119299627-119606632	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1024175	chr7:119299627-119606803	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1018500	chr7:119310497-119532489	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1028812	chr7:119310497-119604904	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv539097	chr7:119310497-119604904	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv1033418	chr7:119324894-119600025	Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv539098	chr7:119324894-119600025	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	esv1808130	chr7:119332021-119388127	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7782632	SLC13A1	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119345800-119346800	ZNF genes & repeats	K562	blood
2	chr7:119345800-119347000	Enhancers	Dnd41	blood

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