Variant report

Variant	rs73723013
Chromosome Location	chr7:119540221-119540222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 203 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:188)

rs_ID	r²[population]
rs10081200	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10233221	0.96[ASN][1000 genomes]
rs10236586	0.96[ASN][1000 genomes]
rs10258725	0.96[ASN][1000 genomes]
rs10273802	1.00[ASN][1000 genomes]
rs10279052	0.96[ASN][1000 genomes]
rs10279203	1.00[ASN][1000 genomes]
rs10500075	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10500077	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1099820	0.96[ASN][1000 genomes]
rs11487119	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11761345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11763158	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11764046	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11764108	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11764197	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11766052	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11767175	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11767335	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11770087	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11770943	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11771353	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11771830	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11772195	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11973192	1.00[ASN][1000 genomes]
rs11978043	0.96[ASN][1000 genomes]
rs12536246	0.96[ASN][1000 genomes]
rs12671360	0.96[ASN][1000 genomes]
rs12706258	0.92[ASN][1000 genomes]
rs12706259	0.96[ASN][1000 genomes]
rs12706263	0.96[ASN][1000 genomes]
rs12706264	0.96[ASN][1000 genomes]
rs12706265	0.96[ASN][1000 genomes]
rs13239182	0.96[ASN][1000 genomes]
rs1357670	0.96[ASN][1000 genomes]
rs1357672	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1357674	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1404078	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1404080	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1404083	0.89[ASN][1000 genomes]
rs1524197	0.96[ASN][1000 genomes]
rs1524199	0.96[ASN][1000 genomes]
rs1524203	0.96[ASN][1000 genomes]
rs1524205	0.96[ASN][1000 genomes]
rs1581504	0.96[ASN][1000 genomes]
rs1589754	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1608585	0.96[ASN][1000 genomes]
rs17142284	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17142302	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17142311	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17142315	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17142320	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17142326	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17142336	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17278994	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17279126	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17279575	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17279645	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17280552	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17280657	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17345578	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17345704	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17518341	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17518502	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1810339	1.00[ASN][1000 genomes]
rs1851806	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1916859	0.96[ASN][1000 genomes]
rs1916861	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1949781	0.96[ASN][1000 genomes]
rs2049377	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2049381	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2108143	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2140569	0.96[ASN][1000 genomes]
rs2177497	1.00[ASN][1000 genomes]
rs2402490	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2402491	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28465102	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34352135	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34943632	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36054882	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3857835	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4236612	0.96[ASN][1000 genomes]
rs4268068	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4338036	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4342531	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4398835	0.96[ASN][1000 genomes]
rs4644180	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4727901	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4727903	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4727904	0.96[ASN][1000 genomes]
rs4730933	0.92[ASN][1000 genomes]
rs4730935	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4730936	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730939	0.96[ASN][1000 genomes]
rs4730940	0.92[ASN][1000 genomes]
rs4730941	0.96[ASN][1000 genomes]
rs4730945	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55897535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56750874	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57408882	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57472313	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57622763	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57899966	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57959404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58374970	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58440464	0.86[EUR][1000 genomes]
rs59561401	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59615990	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60150709	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60741204	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60866751	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61121232	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62477384	0.88[ASN][1000 genomes]
rs6466708	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6466713	0.96[ASN][1000 genomes]
rs6466714	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6466717	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6943195	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6944331	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6946759	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6947105	0.96[ASN][1000 genomes]
rs6947172	0.96[ASN][1000 genomes]
rs6948585	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6949406	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6950247	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6951577	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6955609	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6957872	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6961307	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6962153	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6962613	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6962888	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967604	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6971229	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6972621	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6973035	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6975347	0.91[EUR][1000 genomes]
rs6977777	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6978098	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73485255	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73487162	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73487163	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73487176	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73723012	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7777009	0.88[ASN][1000 genomes]
rs7778068	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7779499	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7779886	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7780266	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7782632	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7784543	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7784594	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7789561	0.96[ASN][1000 genomes]
rs7791292	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7793062	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7797244	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7798013	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7799128	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7799153	0.92[ASN][1000 genomes]
rs7799166	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7803264	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7804447	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7806056	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7808597	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7808954	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810563	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810698	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7811166	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7811885	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs846420	0.92[ASN][1000 genomes]
rs846421	0.96[ASN][1000 genomes]
rs846424	0.96[ASN][1000 genomes]
rs846428	0.96[ASN][1000 genomes]
rs846431	0.96[ASN][1000 genomes]
rs846437	0.96[ASN][1000 genomes]
rs846438	0.96[ASN][1000 genomes]
rs846439	0.96[ASN][1000 genomes]
rs846441	0.96[ASN][1000 genomes]
rs846444	0.96[ASN][1000 genomes]
rs846445	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs846448	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs940412	0.89[ASN][1000 genomes]
rs961361	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9640790	0.96[ASN][1000 genomes]
rs9640791	0.96[ASN][1000 genomes]
rs9692075	1.00[ASN][1000 genomes]
rs9801364	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9801367	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889115	chr7:119270386-119577292	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1029023	chr7:119292763-119606632	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1023813	chr7:119292763-119606803	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv524225	chr7:119293417-119606632	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1029841	chr7:119299627-119606632	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1024175	chr7:119299627-119606803	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1028812	chr7:119310497-119604904	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv539097	chr7:119310497-119604904	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1033418	chr7:119324894-119600025	Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv539098	chr7:119324894-119600025	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv470388	chr7:119464310-119790102	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	esv1833643	chr7:119484927-119557536	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv464706	chr7:119514703-119612541	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv608324	chr7:119514703-119612541	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	esv2753623	chr7:119532049-119770049	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119539800-119541800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr7:119539800-119541800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:119540000-119540400	Strong transcription	K562	blood

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