Variant report

Variant	rs12706258
Chromosome Location	chr7:119399411-119399412
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:119397490..119400025-chr7:119421872..119424720,2	MCF-7	breast:

Extended variants
information (count: 227 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:211)

rs_ID	r²[population]
rs10081200	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10233221	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10236586	0.88[ASN][1000 genomes]
rs10239992	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10245797	0.85[ASN][1000 genomes]
rs10251920	0.81[ASN][1000 genomes]
rs10258725	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10266505	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10267600	0.81[ASN][1000 genomes]
rs10273802	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10274141	0.85[ASN][1000 genomes]
rs10279052	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10279203	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10500075	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10500077	0.92[ASN][1000 genomes]
rs1073047	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1099820	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1099821	0.89[EUR][1000 genomes]
rs11487119	0.85[ASN][1000 genomes]
rs11761345	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11763158	0.92[ASN][1000 genomes]
rs11764046	0.92[ASN][1000 genomes]
rs11764108	0.92[ASN][1000 genomes]
rs11764197	0.92[ASN][1000 genomes]
rs11766052	0.92[ASN][1000 genomes]
rs11767175	0.92[ASN][1000 genomes]
rs11767335	0.92[ASN][1000 genomes]
rs11770085	0.81[ASN][1000 genomes]
rs11770087	0.92[ASN][1000 genomes]
rs11770943	0.92[ASN][1000 genomes]
rs11771353	0.92[ASN][1000 genomes]
rs11771830	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11772195	0.92[ASN][1000 genomes]
rs11973192	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11978043	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12536246	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12537312	0.81[ASN][1000 genomes]
rs12540739	0.81[ASN][1000 genomes]
rs12671360	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12706259	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12706263	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12706264	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12706265	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13239182	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1357670	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1357672	0.92[ASN][1000 genomes]
rs1357674	0.89[ASN][1000 genomes]
rs1404078	0.92[ASN][1000 genomes]
rs1404080	0.89[ASN][1000 genomes]
rs1404083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1524197	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1524199	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1524203	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1524205	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1581504	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1589754	0.92[ASN][1000 genomes]
rs1608585	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17142284	0.92[ASN][1000 genomes]
rs17142302	0.92[ASN][1000 genomes]
rs17142311	0.92[ASN][1000 genomes]
rs17142315	0.89[ASN][1000 genomes]
rs17142320	0.89[ASN][1000 genomes]
rs17142326	0.89[ASN][1000 genomes]
rs17142336	0.92[ASN][1000 genomes]
rs17278994	0.92[ASN][1000 genomes]
rs17279126	0.92[ASN][1000 genomes]
rs17279575	0.92[ASN][1000 genomes]
rs17279645	0.92[ASN][1000 genomes]
rs17280552	0.92[ASN][1000 genomes]
rs17280657	0.92[ASN][1000 genomes]
rs17345578	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17345704	0.92[ASN][1000 genomes]
rs17518341	0.92[ASN][1000 genomes]
rs17518502	0.92[ASN][1000 genomes]
rs1810339	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1851806	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1916859	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1916861	0.92[ASN][1000 genomes]
rs1949781	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2049377	0.92[ASN][1000 genomes]
rs2049381	0.92[ASN][1000 genomes]
rs2108143	0.92[ASN][1000 genomes]
rs2140569	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2177497	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2402490	0.92[ASN][1000 genomes]
rs2402491	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28465102	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28843793	0.81[ASN][1000 genomes]
rs28893249	0.81[ASN][1000 genomes]
rs34352135	0.92[ASN][1000 genomes]
rs34943632	0.92[ASN][1000 genomes]
rs36054882	0.92[ASN][1000 genomes]
rs3857835	0.92[ASN][1000 genomes]
rs4236612	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4268068	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4338036	0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs4342531	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4398835	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4486113	0.81[ASN][1000 genomes]
rs4644180	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4727897	0.85[ASN][1000 genomes]
rs4727901	0.85[ASN][1000 genomes]
rs4727903	0.92[ASN][1000 genomes]
rs4727904	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4730924	0.81[ASN][1000 genomes]
rs4730929	0.81[ASN][1000 genomes]
rs4730930	0.85[ASN][1000 genomes]
rs4730933	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4730935	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4730936	0.92[ASN][1000 genomes]
rs4730939	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4730940	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4730941	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4730945	0.92[ASN][1000 genomes]
rs55897535	0.92[ASN][1000 genomes]
rs56750874	0.89[ASN][1000 genomes]
rs57472313	0.92[ASN][1000 genomes]
rs57622763	0.92[ASN][1000 genomes]
rs57899966	0.92[ASN][1000 genomes]
rs57959404	0.92[ASN][1000 genomes]
rs58141692	0.85[ASN][1000 genomes]
rs58374970	0.92[ASN][1000 genomes]
rs59561401	0.92[ASN][1000 genomes]
rs59615990	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60150709	0.92[ASN][1000 genomes]
rs60741204	0.92[ASN][1000 genomes]
rs60866751	0.88[ASN][1000 genomes]
rs61121232	0.92[ASN][1000 genomes]
rs62477384	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6466707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6466708	0.85[ASN][1000 genomes]
rs6466713	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6466714	0.92[ASN][1000 genomes]
rs6466717	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6944331	0.92[ASN][1000 genomes]
rs6946759	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6947105	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6947172	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6948585	0.92[ASN][1000 genomes]
rs6949406	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6950247	0.92[ASN][1000 genomes]
rs6951577	0.85[ASN][1000 genomes]
rs6955609	0.81[ASN][1000 genomes]
rs6957872	0.92[ASN][1000 genomes]
rs6958096	0.81[ASN][1000 genomes]
rs6961307	0.92[ASN][1000 genomes]
rs6962153	0.92[ASN][1000 genomes]
rs6962613	0.92[ASN][1000 genomes]
rs6962888	0.92[ASN][1000 genomes]
rs6967604	0.92[ASN][1000 genomes]
rs6971229	0.92[ASN][1000 genomes]
rs6972621	0.92[ASN][1000 genomes]
rs6973035	0.92[ASN][1000 genomes]
rs6977777	0.85[ASN][1000 genomes]
rs6978098	0.89[ASN][1000 genomes]
rs73483305	0.81[ASN][1000 genomes]
rs73485255	0.89[ASN][1000 genomes]
rs73487162	0.89[ASN][1000 genomes]
rs73487163	0.89[ASN][1000 genomes]
rs73487176	0.89[ASN][1000 genomes]
rs73720503	0.85[ASN][1000 genomes]
rs73722420	0.85[ASN][1000 genomes]
rs73722422	0.85[ASN][1000 genomes]
rs73722423	0.85[ASN][1000 genomes]
rs73723012	0.92[ASN][1000 genomes]
rs73723013	0.92[ASN][1000 genomes]
rs7777009	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7778068	0.81[ASN][1000 genomes]
rs7779499	0.92[ASN][1000 genomes]
rs7779886	0.92[ASN][1000 genomes]
rs7780266	0.92[ASN][1000 genomes]
rs7782632	0.85[ASN][1000 genomes]
rs7784543	0.92[ASN][1000 genomes]
rs7784594	0.92[ASN][1000 genomes]
rs7789561	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7791292	0.92[ASN][1000 genomes]
rs7793062	0.92[ASN][1000 genomes]
rs7796017	0.85[ASN][1000 genomes]
rs7797244	0.92[ASN][1000 genomes]
rs7798013	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7799128	0.85[ASN][1000 genomes]
rs7799153	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7799166	0.85[ASN][1000 genomes]
rs7803264	0.85[ASN][1000 genomes]
rs7804447	0.92[ASN][1000 genomes]
rs7806056	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7808597	0.92[ASN][1000 genomes]
rs7808954	0.92[ASN][1000 genomes]
rs7810563	0.81[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7810698	0.92[ASN][1000 genomes]
rs7811166	0.92[ASN][1000 genomes]
rs7811885	0.92[ASN][1000 genomes]
rs846420	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs846421	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs846424	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs846428	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs846431	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs846437	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs846438	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs846439	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs846441	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs846444	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs846445	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs846448	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs940412	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs961361	0.92[ASN][1000 genomes]
rs9640790	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9640791	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9692075	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9801364	0.92[ASN][1000 genomes]
rs9801367	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949327	chr7:119179990-119402882	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv889114	chr7:119206096-119440159	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv889115	chr7:119270386-119577292	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1029023	chr7:119292763-119606632	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1023813	chr7:119292763-119606803	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv524225	chr7:119293417-119606632	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1029841	chr7:119299627-119606632	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1024175	chr7:119299627-119606803	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1018500	chr7:119310497-119532489	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1028812	chr7:119310497-119604904	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv539097	chr7:119310497-119604904	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv1033418	chr7:119324894-119600025	Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv539098	chr7:119324894-119600025	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv608322	chr7:119363703-119467040	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv608323	chr7:119363703-119469204	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv1024697	chr7:119377777-119426170	Enhancers Weak transcription Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119364800-119416000	Weak transcription	K562	blood
2	chr7:119396800-119400400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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