Variant report

Variant	rs6975347
Chromosome Location	chr7:119350575-119350576
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 155 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs10245797	0.98[EUR][1000 genomes]
rs10251920	0.98[EUR][1000 genomes]
rs10273802	0.81[EUR][1000 genomes]
rs10274141	0.98[EUR][1000 genomes]
rs10279052	0.81[EUR][1000 genomes]
rs10500075	0.98[EUR][1000 genomes]
rs10500077	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11487119	0.97[EUR][1000 genomes]
rs11761345	0.91[EUR][1000 genomes]
rs11763158	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11764046	0.90[EUR][1000 genomes]
rs11764108	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11764197	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11766052	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11767175	0.95[EUR][1000 genomes]
rs11767335	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11770087	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11770943	0.91[EUR][1000 genomes]
rs11771353	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11771830	0.97[EUR][1000 genomes]
rs11772195	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1357672	0.95[EUR][1000 genomes]
rs1357674	0.95[EUR][1000 genomes]
rs1404078	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1404080	0.97[EUR][1000 genomes]
rs1589754	0.97[EUR][1000 genomes]
rs17142284	0.98[EUR][1000 genomes]
rs17142302	0.98[EUR][1000 genomes]
rs17142311	0.97[EUR][1000 genomes]
rs17142315	0.97[EUR][1000 genomes]
rs17142320	0.97[EUR][1000 genomes]
rs17142326	0.97[EUR][1000 genomes]
rs17142336	0.95[EUR][1000 genomes]
rs17278994	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17279126	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17279575	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17279645	0.97[EUR][1000 genomes]
rs17280552	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17280657	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17345578	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17345704	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17518341	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17518502	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1810339	0.81[EUR][1000 genomes]
rs1851806	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1916861	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2049377	0.98[EUR][1000 genomes]
rs2049381	0.97[EUR][1000 genomes]
rs2108143	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2402490	0.97[EUR][1000 genomes]
rs34352135	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34943632	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36054882	0.98[EUR][1000 genomes]
rs3857835	0.95[EUR][1000 genomes]
rs4268068	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4338036	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4342531	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4727897	0.83[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs4727901	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4727903	0.90[EUR][1000 genomes]
rs4730929	0.98[EUR][1000 genomes]
rs4730930	0.82[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs4730933	0.81[EUR][1000 genomes]
rs4730935	0.97[EUR][1000 genomes]
rs4730936	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55897535	0.91[EUR][1000 genomes]
rs56750874	0.97[EUR][1000 genomes]
rs57408882	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57472313	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57622763	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57899966	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57959404	0.91[EUR][1000 genomes]
rs58141692	0.97[EUR][1000 genomes]
rs58374970	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58440464	0.88[EUR][1000 genomes]
rs59561401	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60150709	0.95[EUR][1000 genomes]
rs60741204	0.95[EUR][1000 genomes]
rs60866751	0.97[EUR][1000 genomes]
rs61121232	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62477384	0.81[EUR][1000 genomes]
rs6466708	0.97[EUR][1000 genomes]
rs6466714	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6943195	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6944331	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6946759	0.98[EUR][1000 genomes]
rs6948585	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6950247	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6951577	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6955609	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6957872	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6961307	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6962153	0.98[EUR][1000 genomes]
rs6962613	0.97[EUR][1000 genomes]
rs6962888	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6967604	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6972621	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6973035	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6977777	0.95[EUR][1000 genomes]
rs6978098	0.97[EUR][1000 genomes]
rs73485255	0.89[EUR][1000 genomes]
rs73487162	0.98[EUR][1000 genomes]
rs73487163	0.98[EUR][1000 genomes]
rs73487176	0.87[EUR][1000 genomes]
rs73720503	0.98[EUR][1000 genomes]
rs73722420	0.98[EUR][1000 genomes]
rs73722422	0.98[EUR][1000 genomes]
rs73722423	0.98[EUR][1000 genomes]
rs73723012	0.91[EUR][1000 genomes]
rs73723013	0.91[EUR][1000 genomes]
rs7777009	0.81[EUR][1000 genomes]
rs7778068	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7779499	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7779886	0.96[EUR][1000 genomes]
rs7780266	0.95[EUR][1000 genomes]
rs7782632	1.00[EUR][1000 genomes]
rs7784543	0.97[EUR][1000 genomes]
rs7784594	0.97[EUR][1000 genomes]
rs7791292	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7793062	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7796017	0.98[EUR][1000 genomes]
rs7797244	0.95[EUR][1000 genomes]
rs7799128	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7799153	0.81[EUR][1000 genomes]
rs7799166	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7803264	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7804447	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7808597	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7808954	0.89[EUR][1000 genomes]
rs7810563	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7810698	0.98[EUR][1000 genomes]
rs7811166	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7811885	0.95[EUR][1000 genomes]
rs961361	0.97[EUR][1000 genomes]
rs9692075	0.81[EUR][1000 genomes]
rs9801364	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9801367	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949327	chr7:119179990-119402882	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv889114	chr7:119206096-119440159	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv889115	chr7:119270386-119577292	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1029023	chr7:119292763-119606632	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1023813	chr7:119292763-119606803	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv524225	chr7:119293417-119606632	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1029841	chr7:119299627-119606632	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1024175	chr7:119299627-119606803	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1018500	chr7:119310497-119532489	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1028812	chr7:119310497-119604904	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv539097	chr7:119310497-119604904	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv1033418	chr7:119324894-119600025	Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv539098	chr7:119324894-119600025	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	esv1808130	chr7:119332021-119388127	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv1021911	chr7:119346017-119389972	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv1019030	chr7:119346017-119393756	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	esv2761359	chr7:119346029-119389984	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv5926	chr7:119350040-119389641	Weak transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119346800-119364200	Weak transcription	K562	blood

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