Variant report

Variant	rs58440464
Chromosome Location	chr7:119436329-119436330
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:119436312..119439377-chr7:119443726..119446740,3	K562	blood:

Extended variants
information (count: 147 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:131)

rs_ID	r²[population]
rs10245797	0.87[EUR][1000 genomes]
rs10251920	0.87[EUR][1000 genomes]
rs10274141	0.87[EUR][1000 genomes]
rs10500075	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10500077	0.90[EUR][1000 genomes]
rs11487119	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11761345	0.86[EUR][1000 genomes]
rs11763158	0.90[EUR][1000 genomes]
rs11764046	0.85[EUR][1000 genomes]
rs11764108	0.90[EUR][1000 genomes]
rs11764197	0.90[EUR][1000 genomes]
rs11766052	0.86[EUR][1000 genomes]
rs11767175	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11767335	0.87[EUR][1000 genomes]
rs11770087	0.85[EUR][1000 genomes]
rs11770943	0.86[EUR][1000 genomes]
rs11771353	0.92[EUR][1000 genomes]
rs11771830	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11772195	0.86[EUR][1000 genomes]
rs1357672	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1357674	0.90[EUR][1000 genomes]
rs1404078	0.87[EUR][1000 genomes]
rs1404080	0.92[EUR][1000 genomes]
rs1589754	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17142284	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17142302	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17142311	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17142315	0.89[EUR][1000 genomes]
rs17142320	0.89[EUR][1000 genomes]
rs17142326	0.92[EUR][1000 genomes]
rs17142336	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17278994	0.90[EUR][1000 genomes]
rs17279126	0.90[EUR][1000 genomes]
rs17279575	0.89[EUR][1000 genomes]
rs17279645	0.89[EUR][1000 genomes]
rs17280552	0.90[EUR][1000 genomes]
rs17280657	0.90[EUR][1000 genomes]
rs17345578	0.92[EUR][1000 genomes]
rs17345704	0.91[EUR][1000 genomes]
rs17518341	0.86[EUR][1000 genomes]
rs17518502	0.86[EUR][1000 genomes]
rs1851806	0.89[EUR][1000 genomes]
rs1916861	0.90[EUR][1000 genomes]
rs2049377	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2049381	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2108143	0.86[EUR][1000 genomes]
rs2402490	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34352135	0.86[EUR][1000 genomes]
rs34943632	0.84[EUR][1000 genomes]
rs36054882	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3857835	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4268068	0.83[EUR][1000 genomes]
rs4338036	0.86[EUR][1000 genomes]
rs4342531	0.84[EUR][1000 genomes]
rs4727897	0.87[EUR][1000 genomes]
rs4727901	0.88[EUR][1000 genomes]
rs4727903	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4730929	0.87[EUR][1000 genomes]
rs4730930	0.87[EUR][1000 genomes]
rs4730935	0.92[EUR][1000 genomes]
rs4730936	0.92[EUR][1000 genomes]
rs4730945	0.82[EUR][1000 genomes]
rs55897535	0.86[EUR][1000 genomes]
rs56750874	0.92[EUR][1000 genomes]
rs57408882	0.91[EUR][1000 genomes]
rs57472313	0.90[EUR][1000 genomes]
rs57622763	0.89[EUR][1000 genomes]
rs57899966	0.87[EUR][1000 genomes]
rs57959404	0.86[EUR][1000 genomes]
rs58141692	0.86[EUR][1000 genomes]
rs58374970	0.90[EUR][1000 genomes]
rs59561401	0.90[EUR][1000 genomes]
rs60150709	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60741204	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60866751	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61121232	0.90[EUR][1000 genomes]
rs6466708	0.85[EUR][1000 genomes]
rs6466714	0.90[EUR][1000 genomes]
rs6943195	0.88[EUR][1000 genomes]
rs6944331	0.90[EUR][1000 genomes]
rs6946759	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6948585	0.92[EUR][1000 genomes]
rs6950247	0.89[EUR][1000 genomes]
rs6951577	0.90[EUR][1000 genomes]
rs6955609	0.88[EUR][1000 genomes]
rs6957872	0.90[EUR][1000 genomes]
rs6961307	0.86[EUR][1000 genomes]
rs6962153	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6962613	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6962888	0.90[EUR][1000 genomes]
rs6967604	0.92[EUR][1000 genomes]
rs6971229	0.82[EUR][1000 genomes]
rs6972621	0.92[EUR][1000 genomes]
rs6973035	0.89[EUR][1000 genomes]
rs6975347	0.88[EUR][1000 genomes]
rs6977777	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6978098	0.92[EUR][1000 genomes]
rs73485255	0.84[EUR][1000 genomes]
rs73487162	0.90[EUR][1000 genomes]
rs73487163	0.90[EUR][1000 genomes]
rs73487176	0.81[EUR][1000 genomes]
rs73720503	0.87[EUR][1000 genomes]
rs73722420	0.87[EUR][1000 genomes]
rs73722422	0.87[EUR][1000 genomes]
rs73722423	0.87[EUR][1000 genomes]
rs73723012	0.86[EUR][1000 genomes]
rs73723013	0.86[EUR][1000 genomes]
rs7778068	0.88[EUR][1000 genomes]
rs7779499	0.92[EUR][1000 genomes]
rs7779886	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7780266	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7782632	0.88[EUR][1000 genomes]
rs7784543	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7784594	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7791292	0.88[EUR][1000 genomes]
rs7793062	0.90[EUR][1000 genomes]
rs7796017	0.87[EUR][1000 genomes]
rs7797244	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7799128	0.88[EUR][1000 genomes]
rs7799166	0.88[EUR][1000 genomes]
rs7803264	0.90[EUR][1000 genomes]
rs7804447	0.90[EUR][1000 genomes]
rs7808597	0.90[EUR][1000 genomes]
rs7808954	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7810563	0.87[EUR][1000 genomes]
rs7810698	0.90[EUR][1000 genomes]
rs7811166	0.90[EUR][1000 genomes]
rs7811885	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs961361	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9801364	0.88[EUR][1000 genomes]
rs9801367	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889114	chr7:119206096-119440159	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv889115	chr7:119270386-119577292	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1029023	chr7:119292763-119606632	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1023813	chr7:119292763-119606803	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv524225	chr7:119293417-119606632	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1029841	chr7:119299627-119606632	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1024175	chr7:119299627-119606803	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1018500	chr7:119310497-119532489	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1028812	chr7:119310497-119604904	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv539097	chr7:119310497-119604904	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv1033418	chr7:119324894-119600025	Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv539098	chr7:119324894-119600025	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv608322	chr7:119363703-119467040	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv608323	chr7:119363703-119469204	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv1018731	chr7:119411352-119493951	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv1025273	chr7:119412165-119493951	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119428600-119437000	Weak transcription	K562	blood

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