Variant report

Variant	rs73721301
Chromosome Location	chr7:127738856-127738857
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:127737543..127740197-chr7:127740336..127742903,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs58530029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58719617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59781795	0.92[AFR][1000 genomes]
rs59896746	0.89[AFR][1000 genomes]
rs73721291	0.92[AFR][1000 genomes]
rs73721293	0.92[AFR][1000 genomes]
rs73721294	0.92[AFR][1000 genomes]
rs73721295	0.92[AFR][1000 genomes]
rs73721296	0.92[AFR][1000 genomes]
rs73721297	0.92[AFR][1000 genomes]
rs73721298	0.92[AFR][1000 genomes]
rs73721300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73723818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73723819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv3419168	chr7:127738691-127738890	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127707800-127742200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr7:127724000-127739800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:127724600-127743600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr7:127725800-127739000	Strong transcription	Fetal Muscle Trunk	muscle
5	chr7:127726000-127743600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr7:127726200-127739200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:127726200-127739400	Strong transcription	Fetal Intestine Small	intestine
8	chr7:127726600-127739400	Strong transcription	Fetal Stomach	stomach
9	chr7:127727200-127740000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr7:127729200-127739600	Strong transcription	Fetal Intestine Large	intestine
11	chr7:127730000-127742800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:127730400-127740600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr7:127730400-127743800	Weak transcription	HSMM	muscle
14	chr7:127731000-127739000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr7:127731400-127743600	Weak transcription	Brain Substantia Nigra	brain
16	chr7:127731800-127743600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr7:127732200-127743600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr7:127732800-127743600	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr7:127733000-127739400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr7:127733000-127739400	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr7:127733000-127740600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr7:127733200-127743600	Weak transcription	Primary B cells from cord blood	blood
23	chr7:127733200-127743800	Weak transcription	Small Intestine	intestine
24	chr7:127733400-127740400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr7:127733600-127743400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr7:127733600-127743600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr7:127733800-127740400	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr7:127733800-127743400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr7:127734000-127740400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr7:127734000-127741200	Weak transcription	Fetal Lung	lung
31	chr7:127734200-127743600	Weak transcription	NHDF-Ad	bronchial
32	chr7:127734400-127744000	Weak transcription	A549	lung
33	chr7:127734400-127748200	Weak transcription	Dnd41	blood
34	chr7:127734600-127739200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr7:127734600-127740000	Weak transcription	HSMMtube	muscle
36	chr7:127734600-127743600	Weak transcription	Brain Hippocampus Middle	brain
37	chr7:127734600-127743600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr7:127734800-127740000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr7:127734800-127740400	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr7:127734800-127743600	Weak transcription	Brain Anterior Caudate	brain
41	chr7:127734800-127743600	Weak transcription	HUVEC	blood vessel
42	chr7:127735000-127739800	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr7:127735000-127740000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr7:127735000-127740600	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr7:127735000-127741200	Weak transcription	Aorta	Aorta
46	chr7:127735000-127743600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr7:127735000-127743600	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr7:127735200-127740600	Weak transcription	Spleen	Spleen
49	chr7:127735200-127742400	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr7:127735200-127743000	Weak transcription	Right Atrium	heart

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