Variant report

Variant	rs73723818
Chromosome Location	chr7:127753416-127753417
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs58530029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58719617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59781795	0.92[AFR][1000 genomes]
rs59896746	0.89[AFR][1000 genomes]
rs73721291	0.92[AFR][1000 genomes]
rs73721293	0.92[AFR][1000 genomes]
rs73721294	0.92[AFR][1000 genomes]
rs73721295	0.92[AFR][1000 genomes]
rs73721296	0.92[AFR][1000 genomes]
rs73721297	0.92[AFR][1000 genomes]
rs73721298	0.92[AFR][1000 genomes]
rs73721300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73723819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127744600-127761600	Weak transcription	Right Atrium	heart
2	chr7:127750600-127754000	Enhancers	Spleen	Spleen
3	chr7:127752200-127754000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:127752800-127755800	Weak transcription	Esophagus	oesophagus
5	chr7:127753000-127754000	Enhancers	Brain Anterior Caudate	brain
6	chr7:127753200-127755200	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr7:127753200-127755400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:127753200-127755400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr7:127753400-127754000	Enhancers	Brain Hippocampus Middle	brain
10	chr7:127753400-127754000	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr7:127753400-127754600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr7:127753400-127757200	Weak transcription	Primary B cells from cord blood	blood
13	chr7:127753400-127757400	Weak transcription	Fetal Thymus	thymus
14	chr7:127753400-127762000	Weak transcription	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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