Variant report

Variant	rs73722769
Chromosome Location	chr6:12331784-12331785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:12292827..12295303-chr6:12330889..12332793,2	MCF-7	breast:
2	chr6:12330412..12331925-chr6:12484463..12486151,2	MCF-7	breast:
3	chr6:12331038..12333504-chr6:12480063..12482828,2	MCF-7	breast:
4	chr6:12330604..12333158-chr6:12489739..12491762,2	MCF-7	breast:
5	chr6:12330915..12334155-chr6:12334557..12337652,4	MCF-7	breast:
6	chr6:12289926..12292428-chr6:12329322..12332076,4	MCF-7	breast:
7	chr6:12317622..12319862-chr6:12331456..12333621,2	MCF-7	breast:
8	chr6:12286921..12289909-chr6:12330691..12332397,2	MCF-7	breast:
9	chr6:12329368..12332356-chr6:12340558..12342942,2	MCF-7	breast:
10	chr6:12286691..12293887-chr6:12327157..12336724,21	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000218893	Chromatin interaction
ENSG00000078401	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs9471507	1.00[EUR][1000 genomes]
rs9471509	1.00[EUR][1000 genomes]
rs9471512	1.00[EUR][1000 genomes]
rs9471514	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508394	chr6:12285464-12386745	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12325200-12332200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:12325400-12332000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:12327400-12334600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:12327800-12337000	Enhancers	HepG2	liver
5	chr6:12328000-12335200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:12328800-12334000	Enhancers	Stomach Mucosa	stomach
7	chr6:12328800-12334800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:12329400-12332200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:12329400-12334600	Weak transcription	Hela-S3	cervix
10	chr6:12329400-12335400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:12329400-12336000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:12329400-12336000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:12330000-12332000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:12330200-12332200	Weak transcription	NHEK	skin
15	chr6:12330800-12332200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:12331000-12332000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:12331000-12332800	Enhancers	Pancreas	Pancrea
18	chr6:12331000-12333000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:12331000-12333200	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr6:12331000-12337200	Enhancers	Fetal Intestine Large	intestine
21	chr6:12331000-12337200	Enhancers	Fetal Intestine Small	intestine
22	chr6:12331200-12331800	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr6:12331400-12331800	Enhancers	A549	lung
24	chr6:12331400-12332800	Enhancers	Liver	Liver
25	chr6:12331400-12332800	Enhancers	Stomach Smooth Muscle	stomach
26	chr6:12331600-12332400	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr6:12331600-12332600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:12331600-12332800	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr6:12331600-12332800	Enhancers	Left Ventricle	heart
30	chr6:12331600-12333000	Enhancers	Placenta	Placenta
31	chr6:12331600-12333600	Enhancers	Duodenum Mucosa	Duodenum

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