Variant report

Variant	rs9471507
Chromosome Location	chr6:12339780-12339781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs73722769	1.00[EUR][1000 genomes]
rs9471509	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9471512	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9471514	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508394	chr6:12285464-12386745	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12332000-12340200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:12332200-12344000	Weak transcription	Aorta	Aorta
3	chr6:12332600-12340400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:12335000-12342000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr6:12335000-12342000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:12336000-12343400	Weak transcription	Fetal Kidney	kidney
7	chr6:12336400-12340000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:12336800-12339800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:12336800-12340000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:12336800-12340200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:12336800-12341600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:12336800-12341800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr6:12336800-12342000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr6:12336800-12342000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:12337000-12339800	Weak transcription	Pancreas	Pancrea
16	chr6:12337000-12340000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:12337000-12340200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:12337000-12341400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr6:12337000-12341600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr6:12337000-12341600	Weak transcription	Stomach Mucosa	stomach
21	chr6:12337000-12341800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr6:12337200-12341400	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr6:12337200-12342000	Weak transcription	Hela-S3	cervix
24	chr6:12337200-12348600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:12338200-12343000	Enhancers	Liver	Liver
26	chr6:12338200-12345800	Enhancers	Fetal Intestine Small	intestine
27	chr6:12338600-12342600	Enhancers	A549	lung
28	chr6:12338800-12340600	Enhancers	Duodenum Mucosa	Duodenum
29	chr6:12338800-12345800	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr6:12339000-12346200	Enhancers	Fetal Intestine Large	intestine
31	chr6:12339400-12339800	Enhancers	HepG2	liver
32	chr6:12339400-12340400	Weak transcription	NHEK	skin
33	chr6:12339600-12340200	Enhancers	Rectal Mucosa Donor 29	rectum
34	chr6:12339600-12340200	Enhancers	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links