Variant report

Variant	rs73729778
Chromosome Location	chr6:25176641-25176642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:25175400..25178845-chr6:25193942..25196785,3	MCF-7	breast:
2	chr6:25173529..25176944-chr6:25190264..25194655,4	MCF-7	breast:
3	chr6:25175190..25179049-chr6:25180144..25182616,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000217805	Chromatin interaction
ENSG00000222373	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16890188	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1880274	1.00[EUR][1000 genomes]
rs2394370	1.00[EUR][1000 genomes]
rs56145792	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6456649	1.00[EUR][1000 genomes]
rs6456650	1.00[EUR][1000 genomes]
rs6941305	1.00[EUR][1000 genomes]
rs73729776	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7753443	1.00[EUR][1000 genomes]
rs9461105	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9461110	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9467436	1.00[EUR][1000 genomes]
rs9467437	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023989	chr6:24930362-25285679	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv830611	chr6:25039374-25199112	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1025694	chr6:25136860-25309450	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv1020774	chr6:25154152-25285679	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv538161	chr6:25154152-25285679	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv462663	chr6:25156197-25234884	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv601167	chr6:25156197-25234884	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25165600-25177000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:25167000-25177400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:25168800-25177000	Enhancers	Placenta	Placenta
4	chr6:25169000-25177000	Enhancers	Placenta Amnion	Placenta Amnion
5	chr6:25169200-25177400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:25170000-25177400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:25170400-25177000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:25171400-25177000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:25171400-25177200	Enhancers	HMEC	breast
10	chr6:25171600-25180000	Enhancers	Hela-S3	cervix
11	chr6:25173000-25177000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr6:25173000-25177200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr6:25173000-25177400	Enhancers	Osteobl	bone
14	chr6:25173000-25178600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:25173200-25177000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:25173200-25177000	Enhancers	HUVEC	blood vessel
17	chr6:25173200-25177200	Enhancers	Primary hematopoietic stem cells	blood
18	chr6:25173400-25177000	Enhancers	NHEK	skin
19	chr6:25173800-25177200	Enhancers	HSMMtube	muscle
20	chr6:25174200-25177000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:25174600-25179000	Weak transcription	Adipose Nuclei	Adipose
22	chr6:25174600-25179000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr6:25174600-25179200	Weak transcription	Fetal Lung	lung
24	chr6:25175200-25178800	Weak transcription	NHLF	lung
25	chr6:25175200-25192800	Weak transcription	Aorta	Aorta
26	chr6:25175600-25178800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:25175800-25178800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:25175800-25179000	Enhancers	Colon Smooth Muscle	Colon
29	chr6:25175800-25179000	Weak transcription	Fetal Muscle Leg	muscle
30	chr6:25175800-25179200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:25176200-25178400	Weak transcription	NHDF-Ad	bronchial
32	chr6:25176200-25178600	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr6:25176200-25178600	Weak transcription	Thymus	Thymus
34	chr6:25176200-25178600	Weak transcription	Spleen	Spleen
35	chr6:25176200-25178800	Weak transcription	Fetal Stomach	stomach
36	chr6:25176200-25179000	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr6:25176200-25180000	Weak transcription	NH-A	brain
38	chr6:25176200-25180400	Weak transcription	Left Ventricle	heart
39	chr6:25176200-25192800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr6:25176400-25176800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:25176400-25176800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr6:25176400-25176800	Weak transcription	Ovary	ovary
43	chr6:25176400-25177400	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr6:25176400-25178000	Weak transcription	HSMM	muscle
45	chr6:25176400-25179200	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr6:25176600-25178600	Weak transcription	Fetal Thymus	thymus

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