Variant report

Variant	rs73732510
Chromosome Location	chr5:1973985-1973986
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10067670	0.87[EUR][1000 genomes]
rs13356887	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16902204	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2087139	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2087140	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55989314	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58615662	0.87[EUR][1000 genomes]
rs6861498	0.87[EUR][1000 genomes]
rs6863193	0.81[EUR][1000 genomes]
rs6863375	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73732507	0.87[EUR][1000 genomes]
rs73735137	0.87[EUR][1000 genomes]
rs73735140	0.87[EUR][1000 genomes]
rs73735141	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7705277	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817407	chr5:1495354-2191460	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv869236	chr5:1719263-2259100	Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
3	nsv915846	chr5:1891098-2167677	Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1026930	chr5:1898993-2126061	Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv508344	chr5:1905222-1976860	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv881562	chr5:1907974-1976187	Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv427705	chr5:1950467-2115059	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv4681	chr5:1967628-2010091	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:1973400-1974200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:1973400-1974400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr5:1973400-1974400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
4	chr5:1973400-1975800	Flanking Active TSS	HMEC	breast
5	chr5:1973600-1974000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr5:1973600-1974000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:1973600-1974000	Bivalent Enhancer	Brain Cingulate Gyrus	brain
8	chr5:1973600-1974000	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
9	chr5:1973600-1974000	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
10	chr5:1973600-1974200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:1973600-1974200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr5:1973600-1974200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
13	chr5:1973600-1975600	Flanking Active TSS	NHEK	skin
14	chr5:1973800-1974000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
15	chr5:1973800-1974200	Enhancers	H1 Cell Line	embryonic stem cell
16	chr5:1973800-1974400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr5:1973800-1974400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr5:1973800-1974800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr5:1973800-1974800	Weak transcription	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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