Variant report

Variant	rs73735137
Chromosome Location	chr5:1964360-1964361
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:1963054..1964814-chr5:1964863..1967113,2	MCF-7	breast:
2	chr5:1961890..1964655-chr5:1980706..1982291,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10055530	0.86[EUR][1000 genomes]
rs10055535	0.86[EUR][1000 genomes]
rs10067670	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10073095	0.86[EUR][1000 genomes]
rs13356887	1.00[EUR][1000 genomes]
rs13361234	0.86[EUR][1000 genomes]
rs16902204	1.00[EUR][1000 genomes]
rs2087139	1.00[EUR][1000 genomes]
rs2087140	1.00[EUR][1000 genomes]
rs28408700	0.86[EUR][1000 genomes]
rs2883062	0.86[EUR][1000 genomes]
rs55989314	1.00[EUR][1000 genomes]
rs57133261	0.86[EUR][1000 genomes]
rs58615662	1.00[EUR][1000 genomes]
rs6861498	1.00[EUR][1000 genomes]
rs6863193	0.93[EUR][1000 genomes]
rs6863375	1.00[EUR][1000 genomes]
rs73732507	1.00[EUR][1000 genomes]
rs73732510	0.87[EUR][1000 genomes]
rs73735132	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73735140	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73735141	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7705277	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817407	chr5:1495354-2191460	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv869236	chr5:1719263-2259100	Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
3	nsv915846	chr5:1891098-2167677	Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1026930	chr5:1898993-2126061	Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv508344	chr5:1905222-1976860	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv881562	chr5:1907974-1976187	Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv427705	chr5:1950467-2115059	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:1939000-1965600	Weak transcription	Brain Angular Gyrus	brain
2	chr5:1955000-1965800	Weak transcription	Adipose Nuclei	Adipose
3	chr5:1958200-1966800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr5:1961200-1967800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:1961400-1964600	Enhancers	HMEC	breast
6	chr5:1961600-1965800	Weak transcription	Dnd41	blood
7	chr5:1961800-1964400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:1962400-1964400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:1963000-1964600	Enhancers	Esophagus	oesophagus
10	chr5:1963200-1964800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr5:1963400-1964600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr5:1964000-1972800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:1964200-1964400	Weak transcription	Right Ventricle	heart

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