Variant report

Variant	rs73733822
Chromosome Location	chr6:44049685-44049686
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:44049188..44054493-chr6:44055504..44059835,8	K562	blood:
2	chr6:43716947..43719346-chr6:44048667..44050985,2	K562	blood:
3	chr6:44048588..44050473-chr6:44060202..44062379,2	K562	blood:
4	chr6:43730164..43744120-chr6:44034600..44052665,50	K562	blood:
5	chr6:43742830..43744458-chr6:44047475..44049981,2	MCF-7	breast:
6	chr6:43633294..43635921-chr6:44047237..44049780,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM63B-3	chr6:44049173-44049994	NONHSAT112943

No data

Variant related genes	Relation type
ENSG00000112715	Chromatin interaction
ENSG00000183239	Chromatin interaction
ENSG00000272114	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9462974	1.00[AMR][1000 genomes]
rs9472224	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
2	nsv462935	chr6:44046143-44117607	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv603002	chr6:44046143-44117607	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44042800-44055000	Weak transcription	Osteobl	bone
2	chr6:44044200-44067000	Weak transcription	NHDF-Ad	bronchial
3	chr6:44044600-44051400	Weak transcription	Psoas Muscle	Psoas
4	chr6:44044600-44067600	Weak transcription	Spleen	Spleen
5	chr6:44044800-44054600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:44044800-44062200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:44044800-44067000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:44044800-44067400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:44044800-44070200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:44044800-44071400	Weak transcription	Colon Smooth Muscle	Colon
11	chr6:44045000-44051600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:44045000-44052000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:44045000-44052000	Weak transcription	Esophagus	oesophagus
14	chr6:44045000-44052000	Weak transcription	Right Atrium	heart
15	chr6:44045000-44052200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr6:44045000-44067400	Weak transcription	Brain Anterior Caudate	brain
17	chr6:44045000-44071800	Weak transcription	Aorta	Aorta
18	chr6:44045400-44051400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr6:44045400-44051800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:44045600-44051600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:44045600-44067000	Weak transcription	Fetal Brain Female	brain
22	chr6:44046200-44057000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:44047000-44050600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr6:44047000-44054600	Weak transcription	Pancreas	Pancrea
25	chr6:44047000-44066600	Weak transcription	Thymus	Thymus
26	chr6:44047200-44056800	Weak transcription	Brain Hippocampus Middle	brain
27	chr6:44047200-44057000	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr6:44047400-44049800	Enhancers	HepG2	liver
29	chr6:44047400-44050600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:44047400-44050600	Weak transcription	Left Ventricle	heart
31	chr6:44047400-44050600	Weak transcription	Right Ventricle	heart
32	chr6:44047400-44050600	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr6:44047400-44051200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr6:44047400-44051600	Weak transcription	HMEC	breast
35	chr6:44047400-44051800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:44047400-44052000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:44047400-44052000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:44047400-44054600	Weak transcription	Fetal Intestine Small	intestine
39	chr6:44047400-44054600	Weak transcription	Fetal Stomach	stomach
40	chr6:44047400-44056800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:44047400-44059000	Weak transcription	Fetal Brain Male	brain
42	chr6:44047400-44061600	Weak transcription	Stomach Smooth Muscle	stomach
43	chr6:44047400-44061800	Weak transcription	Brain Angular Gyrus	brain
44	chr6:44047400-44062000	Weak transcription	Brain Germinal Matrix	brain
45	chr6:44047400-44062000	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr6:44047400-44067200	Weak transcription	Dnd41	blood
47	chr6:44047400-44067400	Weak transcription	Primary B cells from peripheral blood	blood
48	chr6:44047400-44067600	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr6:44047400-44069200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr6:44047400-44071400	Weak transcription	Primary T helper cells PMA-I stimulated	--

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