Variant report

Variant	rs9472224
Chromosome Location	chr6:44152754-44152755
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:44152056..44154771-chr6:44158466..44160359,2	K562	blood:
2	chr6:44152401..44154524-chr6:44279508..44281257,2	K562	blood:
3	chr6:44144671..44148642-chr6:44148771..44153207,5	K562	blood:
4	chr6:44152329..44155208-chr6:44155507..44158419,2	K562	blood:

Variant related genes	Relation type
ENSG00000124608	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73733822	1.00[AMR][1000 genomes]
rs9462974	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44144200-44152800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:44145000-44153800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:44145200-44153800	Weak transcription	Spleen	Spleen
4	chr6:44145800-44153600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:44146400-44153600	Weak transcription	Right Ventricle	heart
6	chr6:44147400-44153800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:44148400-44153200	Weak transcription	HUVEC	blood vessel
8	chr6:44149200-44153600	Weak transcription	Adipose Nuclei	Adipose
9	chr6:44150200-44152800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr6:44151600-44153200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:44151600-44153600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr6:44151600-44153800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:44151800-44153200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr6:44151800-44153200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:44151800-44153200	Weak transcription	Esophagus	oesophagus
16	chr6:44151800-44153600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:44151800-44153600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:44151800-44154600	Enhancers	Stomach Mucosa	stomach
19	chr6:44152000-44153800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:44152200-44153600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr6:44152200-44153800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr6:44152200-44153800	Weak transcription	Fetal Muscle Leg	muscle
23	chr6:44152400-44153000	Enhancers	Fetal Intestine Small	intestine
24	chr6:44152400-44153800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr6:44152600-44153000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr6:44152600-44153600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr6:44152600-44153800	Weak transcription	Colonic Mucosa	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links