Variant report

Variant	rs73735373
Chromosome Location	chr6:45298080-45298081
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:45292654..45296444-chr6:45296488..45298804,3	K562	blood:
2	chr6:45296736..45299376-chr6:45345158..45347288,2	MCF-7	breast:
3	chr6:45294565..45296467-chr6:45297982..45300166,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124813	Chromatin interaction
ENSG00000196284	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs55775000	1.00[AFR][1000 genomes]
rs56232702	1.00[AFR][1000 genomes]
rs56246318	0.86[AFR][1000 genomes]
rs61218822	0.86[AFR][1000 genomes]
rs73735314	1.00[AFR][1000 genomes]
rs73735317	1.00[AFR][1000 genomes]
rs73735387	0.86[AFR][1000 genomes]
rs73735393	0.86[AFR][1000 genomes]
rs73735396	0.86[AFR][1000 genomes]
rs73735397	1.00[AFR][1000 genomes]
rs73738606	1.00[AFR][1000 genomes]
rs73738617	1.00[AFR][1000 genomes]
rs73738618	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv830652	chr6:45187467-45328983	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45292600-45301600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:45295800-45298400	Active TSS	Osteobl	bone
3	chr6:45296000-45298800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:45296200-45298800	Weak transcription	Left Ventricle	heart
5	chr6:45296200-45322800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr6:45296400-45298600	Weak transcription	NHLF	lung
7	chr6:45296600-45298600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:45296600-45298600	Weak transcription	Fetal Heart	heart
9	chr6:45296600-45299000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:45296600-45299000	Enhancers	Dnd41	blood
11	chr6:45297200-45299000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:45297200-45299200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:45297600-45298400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:45297600-45298800	Enhancers	Primary hematopoietic stem cells	blood
15	chr6:45297600-45299200	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:45297800-45298200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:45297800-45298600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr6:45297800-45298800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:45298000-45298600	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr6:45298000-45301600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:45298000-45305800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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