Variant report

Variant	rs73735387
Chromosome Location	chr6:45325621-45325622
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45325121..45327435-chr6:45334510..45336608,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs55775000	0.86[AFR][1000 genomes]
rs55944527	0.83[AFR][1000 genomes]
rs56007105	0.83[AFR][1000 genomes]
rs56166696	0.83[AFR][1000 genomes]
rs56232702	0.86[AFR][1000 genomes]
rs56246318	1.00[AFR][1000 genomes]
rs56389859	0.83[AFR][1000 genomes]
rs57751711	0.86[AFR][1000 genomes]
rs60637239	0.83[AFR][1000 genomes]
rs60756874	0.83[AFR][1000 genomes]
rs61218822	1.00[AFR][1000 genomes]
rs73735305	0.83[AFR][1000 genomes]
rs73735306	0.83[AFR][1000 genomes]
rs73735311	0.83[AFR][1000 genomes]
rs73735312	0.83[AFR][1000 genomes]
rs73735314	0.86[AFR][1000 genomes]
rs73735317	0.86[AFR][1000 genomes]
rs73735326	0.83[AFR][1000 genomes]
rs73735331	0.83[AFR][1000 genomes]
rs73735333	0.83[AFR][1000 genomes]
rs73735334	0.83[AFR][1000 genomes]
rs73735350	0.83[AFR][1000 genomes]
rs73735355	0.83[AFR][1000 genomes]
rs73735371	0.83[AFR][1000 genomes]
rs73735372	0.83[AFR][1000 genomes]
rs73735373	0.86[AFR][1000 genomes]
rs73735377	0.83[AFR][1000 genomes]
rs73735379	0.83[AFR][1000 genomes]
rs73735383	0.86[AFR][1000 genomes]
rs73735393	1.00[AFR][1000 genomes]
rs73735396	1.00[AFR][1000 genomes]
rs73735397	0.86[AFR][1000 genomes]
rs73737404	0.83[AFR][1000 genomes]
rs73737406	0.83[AFR][1000 genomes]
rs73738614	0.83[AFR][1000 genomes]
rs73738615	0.83[AFR][1000 genomes]
rs73738617	0.86[AFR][1000 genomes]
rs73738618	0.86[AFR][1000 genomes]
rs73738620	0.83[AFR][1000 genomes]
rs73738622	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv830652	chr6:45187467-45328983	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45299200-45333200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:45299400-45343800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:45301600-45329600	Weak transcription	Dnd41	blood
4	chr6:45305000-45334000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:45305400-45339800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:45310800-45344800	Weak transcription	Ovary	ovary
7	chr6:45313200-45339000	Weak transcription	Fetal Intestine Small	intestine
8	chr6:45313800-45329600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:45316400-45344000	Weak transcription	Fetal Intestine Large	intestine
10	chr6:45316800-45327400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr6:45318200-45338800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr6:45319800-45332200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:45319800-45343800	Weak transcription	Osteobl	bone
14	chr6:45320200-45327800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:45320200-45343800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr6:45320800-45338800	Weak transcription	HepG2	liver
17	chr6:45320800-45344200	Weak transcription	NH-A	brain
18	chr6:45321400-45337400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:45322800-45327800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:45323400-45344000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:45324200-45335400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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