Variant report

Variant	rs56007105
Chromosome Location	chr6:45175635-45175636
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45170143..45173003-chr6:45173758..45175670,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs55944527	1.00[AFR][1000 genomes]
rs56166696	1.00[AFR][1000 genomes]
rs56246318	0.83[AFR][1000 genomes]
rs56389859	1.00[AFR][1000 genomes]
rs60637239	1.00[AFR][1000 genomes]
rs60756874	1.00[AFR][1000 genomes]
rs61218822	0.83[AFR][1000 genomes]
rs73735305	1.00[AFR][1000 genomes]
rs73735306	1.00[AFR][1000 genomes]
rs73735311	1.00[AFR][1000 genomes]
rs73735312	1.00[AFR][1000 genomes]
rs73735326	1.00[AFR][1000 genomes]
rs73735331	1.00[AFR][1000 genomes]
rs73735333	1.00[AFR][1000 genomes]
rs73735334	1.00[AFR][1000 genomes]
rs73735350	1.00[AFR][1000 genomes]
rs73735355	1.00[AFR][1000 genomes]
rs73735371	1.00[AFR][1000 genomes]
rs73735372	1.00[AFR][1000 genomes]
rs73735377	1.00[AFR][1000 genomes]
rs73735379	1.00[AFR][1000 genomes]
rs73735387	0.83[AFR][1000 genomes]
rs73735393	0.83[AFR][1000 genomes]
rs73735396	0.83[AFR][1000 genomes]
rs73735402	0.83[AFR][1000 genomes]
rs73737404	1.00[AFR][1000 genomes]
rs73737406	1.00[AFR][1000 genomes]
rs73738610	1.00[AFR][1000 genomes]
rs73738614	1.00[AFR][1000 genomes]
rs73738615	1.00[AFR][1000 genomes]
rs73738620	1.00[AFR][1000 genomes]
rs73738622	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv492309	chr6:45020402-45233484	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1032906	chr6:45069368-45212863	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1028068	chr6:45169010-45246577	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45174400-45175800	Enhancers	HepG2	liver
2	chr6:45175400-45178000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:45175600-45178800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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