Variant report

Variant	rs60756874
Chromosome Location	chr6:45283115-45283116
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs55944527	1.00[AFR][1000 genomes]
rs56007105	1.00[AFR][1000 genomes]
rs56166696	1.00[AFR][1000 genomes]
rs56246318	0.83[AFR][1000 genomes]
rs56389859	1.00[AFR][1000 genomes]
rs60637239	1.00[AFR][1000 genomes]
rs61218822	0.83[AFR][1000 genomes]
rs73735305	1.00[AFR][1000 genomes]
rs73735306	1.00[AFR][1000 genomes]
rs73735311	1.00[AFR][1000 genomes]
rs73735312	1.00[AFR][1000 genomes]
rs73735326	1.00[AFR][1000 genomes]
rs73735331	1.00[AFR][1000 genomes]
rs73735333	1.00[AFR][1000 genomes]
rs73735334	1.00[AFR][1000 genomes]
rs73735350	1.00[AFR][1000 genomes]
rs73735355	1.00[AFR][1000 genomes]
rs73735371	1.00[AFR][1000 genomes]
rs73735372	1.00[AFR][1000 genomes]
rs73735377	1.00[AFR][1000 genomes]
rs73735379	1.00[AFR][1000 genomes]
rs73735387	0.83[AFR][1000 genomes]
rs73735393	0.83[AFR][1000 genomes]
rs73735396	0.83[AFR][1000 genomes]
rs73735402	0.83[AFR][1000 genomes]
rs73737404	1.00[AFR][1000 genomes]
rs73737406	1.00[AFR][1000 genomes]
rs73738610	1.00[AFR][1000 genomes]
rs73738614	1.00[AFR][1000 genomes]
rs73738615	1.00[AFR][1000 genomes]
rs73738620	1.00[AFR][1000 genomes]
rs73738622	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv830652	chr6:45187467-45328983	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45275200-45290200	Weak transcription	Fetal Intestine Large	intestine
2	chr6:45276800-45290400	Weak transcription	Fetal Heart	heart
3	chr6:45278600-45288000	Weak transcription	Left Ventricle	heart
4	chr6:45278800-45285000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:45279000-45288400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:45280000-45290600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr6:45280600-45289200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr6:45280600-45290400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:45281000-45288200	Weak transcription	Dnd41	blood
10	chr6:45281200-45288200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr6:45283000-45283200	Enhancers	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links