Variant report

Variant	rs73735414
Chromosome Location	chr6:45626124-45626125
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45624715..45626390-chr6:45626802..45629666,2	MCF-7	breast:
2	chr6:45620998..45623947-chr6:45624058..45626263,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56054143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57853251	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58112491	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58407953	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58844599	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60294597	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60588484	1.00[AMR][1000 genomes]
rs60643594	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73444595	1.00[AMR][1000 genomes]
rs73735411	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73735422	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73735426	1.00[AMR][1000 genomes]
rs73735427	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73735428	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv427755	chr6:45474631-45627025	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45617400-45627400	Enhancers	NHDF-Ad	bronchial
2	chr6:45617800-45627200	Enhancers	NHLF	lung
3	chr6:45618200-45627200	Weak transcription	Gastric	stomach
4	chr6:45618800-45627200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:45620400-45626600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:45620800-45626400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:45621400-45626800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:45624400-45627400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:45624800-45626200	Enhancers	NHEK	skin
10	chr6:45625000-45626200	Enhancers	NH-A	brain
11	chr6:45625000-45626800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:45625200-45626800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:45625400-45627400	Enhancers	Dnd41	blood
14	chr6:45625600-45626200	Enhancers	HSMMtube	muscle
15	chr6:45625600-45627000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:45625800-45627200	Enhancers	Fetal Brain Male	brain
17	chr6:45625800-45627400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr6:45626000-45626400	Enhancers	Osteobl	bone
19	chr6:45626000-45626800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:45626000-45627200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr6:45626000-45627200	Enhancers	HSMM	muscle
22	chr6:45626000-45627400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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