Variant report

Variant	rs73735422
Chromosome Location	chr6:45632623-45632624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56054143	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57853251	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58112491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58407953	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58844599	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60294597	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60588484	1.00[AMR][1000 genomes]
rs60643594	1.00[AMR][1000 genomes]
rs73444595	1.00[AMR][1000 genomes]
rs73735411	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73735414	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73735426	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73735427	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73735428	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45629600-45633200	Weak transcription	Dnd41	blood
2	chr6:45630400-45635000	Weak transcription	NHDF-Ad	bronchial
3	chr6:45631000-45634200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:45631000-45635600	Enhancers	NH-A	brain
5	chr6:45631600-45633400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:45631800-45634200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:45631800-45635000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:45631800-45635400	Weak transcription	Esophagus	oesophagus
9	chr6:45631800-45645000	Weak transcription	Colonic Mucosa	Colon
10	chr6:45632000-45633000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:45632000-45633000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:45632000-45633200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:45632000-45633200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr6:45632000-45633200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr6:45632000-45633400	Enhancers	NHEK	skin
16	chr6:45632000-45634000	Enhancers	Primary T cells from cord blood	blood
17	chr6:45632000-45634600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr6:45632000-45635000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:45632000-45635000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:45632000-45635200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:45632000-45643400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:45632200-45633200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr6:45632200-45633200	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr6:45632200-45633200	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr6:45632200-45634800	Weak transcription	NHLF	lung
26	chr6:45632200-45636600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr6:45632400-45632800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr6:45632400-45635200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:45632600-45634000	Enhancers	HSMMtube	muscle
30	chr6:45632600-45635600	Strong transcription	HSMM	muscle
31	chr6:45632600-45643400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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