Variant report

Variant	rs73736566
Chromosome Location	chr6:26233108-26233109
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CREB1	chr6:26233019-26235417	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr6:26232959-26235359	SK-N-SH	brain:	n/a	n/a
3	SP4	chr6:26232935-26235412	H1-hESC	embryonic stem cell:	n/a	n/a
4	HEY1	chr6:26232360-26235431	K562	blood:	n/a	n/a
5	CHD2	chr6:26232930-26235320	K562	blood:	n/a	n/a
6	POLR2A	chr6:26233043-26235359	GM12878	blood:	n/a	n/a
7	POLR2A	chr6:26232386-26235514	GM12878	blood:	n/a	n/a
8	CHD1	chr6:26233057-26235307	GM12878	blood:	n/a	n/a
9	CHD2	chr6:26232706-26235433	H1-hESC	embryonic stem cell:	n/a	n/a
10	POLR2A	chr6:26230664-26235434	H1-hESC	embryonic stem cell:	n/a	n/a
11	POLR2A	chr6:26232363-26235719	MCF-7	breast:	n/a	n/a
12	TAF7	chr6:26231102-26235460	H1-hESC	embryonic stem cell:	n/a	n/a
13	MXI1	chr6:26232890-26235546	IMR90	lung:	n/a	n/a
14	POLR2A	chr6:26232620-26235395	GM19099	blood:	n/a	n/a
15	POLR2A	chr6:26232125-26235418	H1-hESC	embryonic stem cell:	n/a	n/a
16	NFYB	chr6:26233072-26233375	GM12878	blood:	n/a	chr6:26233134-26233144 chr6:26233195-26233207 chr6:26233134-26233144 chr6:26233191-26233206 chr6:26233193-26233206 chr6:26233278-26233293 chr6:26233133-26233146 chr6:26233191-26233206 chr6:26233278-26233293 chr6:26233279-26233293 chr6:26233192-26233206 chr6:26233194-26233204 chr6:26233194-26233204
17	POLR2A	chr6:26232811-26235382	GM12878	blood:	n/a	n/a
18	SP1	chr6:26232984-26235513	A549	lung:	n/a	chr6:26233271-26233292 chr6:26234394-26234404
19	POLR2A	chr6:26232665-26235322	H1-hESC	embryonic stem cell:	n/a	n/a
20	POLR2A	chr6:26232957-26235746	K562	blood:	n/a	n/a
21	POU2F2	chr6:26232785-26235431	GM12878	blood:	n/a	n/a
22	POLR2A	chr6:26230612-26235624	H1-hESC	embryonic stem cell:	n/a	n/a
23	GATA3	chr6:26233079-26235499	A549	lung:	n/a	n/a
24	MAZ	chr6:26233048-26235460	GM12878	blood:	n/a	n/a
25	POLR2A	chr6:26233101-26235390	GM18526	blood:	n/a	n/a
26	SP1	chr6:26233078-26233629	A549	lung:	n/a	chr6:26233271-26233292
27	POLR2A	chr6:26232466-26235583	GM12878	blood:	n/a	n/a
28	HA-E2F1	chr6:26233106-26234368	MCF-7	breast:	n/a	chr6:26234185-26234194
29	POLR2A	chr6:26230227-26235776	H1-hESC	embryonic stem cell:	n/a	n/a
30	BACH1	chr6:26232589-26234646	K562	blood:	n/a	n/a
31	POLR2A	chr6:26232809-26235426	GM12892	blood:	n/a	n/a
32	CEBPD	chr6:26232760-26235469	K562	blood:	n/a	n/a
33	POLR2A	chr6:26233034-26244857	K562	blood:	n/a	n/a
34	E2F6	chr6:26233106-26234515	A549	lung:	n/a	chr6:26234185-26234194
35	WRNIP1	chr6:26233008-26235414	GM12878	blood:	n/a	n/a
36	POLR2A	chr6:26233077-26235470	ProgFib	skin:	n/a	n/a
37	GATA3	chr6:26232961-26233195	SH-SY5Y	brain:	n/a	n/a
38	BCL11A	chr6:26232816-26233328	H1-hESC	embryonic stem cell:	n/a	n/a
39	MAFK	chr6:26232952-26233680	H1-hESC	embryonic stem cell:	n/a	n/a
40	POLR2A	chr6:26233098-26235497	GM12892	blood:	n/a	n/a
41	TAL1	chr6:26232763-26235358	K562	blood:	n/a	n/a
42	PML	chr6:26233088-26235544	GM12878	blood:	n/a	n/a
43	POLR2A	chr6:26231101-26235372	K562	blood:	n/a	n/a
44	BCLAF1	chr6:26232382-26235441	K562	blood:	n/a	chr6:26234372-26234385 chr6:26234308-26234316
45	RCOR1	chr6:26233031-26235304	GM12878	blood:	n/a	n/a
46	ZBTB33	chr6:26232876-26235484	SK-N-SH	brain:	n/a	chr6:26235409-26235418
47	ATF2	chr6:26233059-26235395	H1-hESC	embryonic stem cell:	n/a	n/a
48	POLR2A	chr6:26232747-26235401	GM12892	blood:	n/a	n/a
49	POLR2A	chr6:26232825-26235456	SK-N-SH	brain:	n/a	n/a
50	MAX	chr6:26233020-26235482	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:26233018..26235518-chr6:27781228..27784528,3	MCF-7	breast:
2	chr6:26025967..26028344-chr6:26231112..26233437,2	MCF-7	breast:
3	chr21:44526126..44528705-chr6:26232568..26234835,2	MCF-7	breast:
4	chr6:26232392..26235722-chr6:27100798..27102386,3	K562	blood:
5	chr19:1650911..1652489-chr6:26231971..26233838,2	K562	blood:
6	chr6:26231234..26236589-chr6:27099738..27104932,8	K562	blood:
7	chr3:183966623..183968865-chr6:26231934..26234192,2	MCF-7	breast:

Variant related genes	Relation type
HIST1H2APS3	TF binding region
ENSG00000071564	Chromatin interaction
ENSG00000196374	Chromatin interaction
ENSG00000182611	Chromatin interaction
ENSG00000214160	Chromatin interaction
ENSG00000145194	Chromatin interaction
ENSG00000124529	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000160201	Chromatin interaction
ENSG00000196787	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16891646	1.00[EUR][1000 genomes]
rs2393651	1.00[EUR][1000 genomes]
rs41266825	1.00[EUR][1000 genomes]
rs55674533	1.00[EUR][1000 genomes]
rs56049309	1.00[EUR][1000 genomes]
rs59620817	1.00[EUR][1000 genomes]
rs73397366	1.00[EUR][1000 genomes]
rs73736553	1.00[EUR][1000 genomes]
rs73736555	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73736559	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73736560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73736561	1.00[EUR][1000 genomes]
rs73736562	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73736574	1.00[EUR][1000 genomes]
rs73736577	1.00[EUR][1000 genomes]
rs73736578	1.00[EUR][1000 genomes]
rs73736580	1.00[EUR][1000 genomes]
rs73736581	1.00[EUR][1000 genomes]
rs73736582	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1030351	chr6:25813178-26352046	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1189 gene(s)	inside rSNPs	diseases
4	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
5	nsv1025237	chr6:25874326-26280867	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
6	nsv538163	chr6:25874326-26280867	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
7	nsv428137	chr6:25987413-26351920	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1181 gene(s)	inside rSNPs	diseases
8	nsv916992	chr6:25991630-26280921	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1159 gene(s)	inside rSNPs	diseases
9	nsv1028232	chr6:26005449-26319756	Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1171 gene(s)	inside rSNPs	diseases
10	nsv870314	chr6:26008435-26280807	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1151 gene(s)	inside rSNPs	diseases
11	nsv1023457	chr6:26014014-26305407	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1170 gene(s)	inside rSNPs	diseases
12	nsv1023979	chr6:26026870-26287399	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1113 gene(s)	inside rSNPs	diseases
13	nsv1015782	chr6:26026870-26323895	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1114 gene(s)	inside rSNPs	diseases
14	nsv1018665	chr6:26026870-26352046	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1116 gene(s)	inside rSNPs	diseases
15	nsv482348	chr6:26082709-26261136	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	799 gene(s)	inside rSNPs	diseases
16	nsv1021294	chr6:26190316-26246784	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	309 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26225600-26233400	Weak transcription	Colonic Mucosa	Colon
2	chr6:26225800-26233400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:26226000-26233200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:26226400-26233200	Weak transcription	Liver	Liver
5	chr6:26226400-26233200	Weak transcription	HUVEC	blood vessel
6	chr6:26226400-26233800	Weak transcription	Gastric	stomach
7	chr6:26226400-26234000	Weak transcription	HSMMtube	muscle
8	chr6:26226600-26233200	Weak transcription	Esophagus	oesophagus
9	chr6:26226600-26233200	Weak transcription	NHLF	lung
10	chr6:26226600-26233600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:26226800-26233200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:26227400-26233200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:26227400-26233200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:26227600-26233200	Weak transcription	NHEK	skin
15	chr6:26227600-26233400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:26228200-26233200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:26231200-26236000	Active TSS	Thymus	Thymus
18	chr6:26231600-26233200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr6:26232000-26233400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:26232400-26233200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:26232400-26233200	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr6:26232400-26236000	Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chr6:26232600-26233200	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr6:26232600-26233200	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr6:26232600-26233400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:26232600-26233400	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr6:26232600-26233800	Flanking Active TSS	Primary T cells from cord blood	blood
28	chr6:26232600-26234200	Flanking Active TSS	Fetal Thymus	thymus
29	chr6:26232600-26234800	Flanking Active TSS	Primary hematopoietic stem cells	blood
30	chr6:26232600-26235800	Active TSS	HUES48 Cell Line	embryonic stem cell
31	chr6:26232800-26233200	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
32	chr6:26232800-26233200	Enhancers	Fetal Heart	heart
33	chr6:26232800-26233200	Flanking Active TSS	Fetal Kidney	kidney
34	chr6:26232800-26233400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
35	chr6:26232800-26233400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr6:26232800-26233600	Flanking Active TSS	Fetal Intestine Small	intestine
37	chr6:26232800-26234000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
38	chr6:26232800-26234000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
39	chr6:26232800-26234000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
40	chr6:26232800-26234000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
41	chr6:26232800-26234000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
42	chr6:26232800-26234000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
43	chr6:26232800-26234200	Flanking Active TSS	GM12878-XiMat	blood
44	chr6:26232800-26234800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr6:26232800-26234800	Flanking Active TSS	K562	blood
46	chr6:26232800-26235000	Flanking Active TSS	Primary B cells from cord blood	blood
47	chr6:26232800-26235000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr6:26232800-26235400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr6:26232800-26235600	Active TSS	HUES64 Cell Line	embryonic stem cell
50	chr6:26232800-26235600	Active TSS	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links