Variant report

Variant	rs73736861
Chromosome Location	chr6:26658633-26658634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:26657992..26660947-chr6:27075942..27078254,2	K562	blood:
2	chr6:26596494..26599047-chr6:26656813..26659512,3	K562	blood:
3	chr6:26649496..26653282-chr6:26658132..26661743,4	MCF-7	breast:
4	chr6:26596494..26598617-chr6:26657895..26659512,2	K562	blood:
5	chr6:26649724..26652257-chr6:26656598..26659161,2	MCF-7	breast:
6	chr6:26601646..26604594-chr6:26657057..26659318,2	K562	blood:
7	chr6:26610871..26613609-chr6:26657956..26660299,2	K562	blood:

Variant related genes	Relation type
ENSG00000146109	Chromatin interaction
ENSG00000271071	Chromatin interaction
ENSG00000222800	Chromatin interaction
ENSG00000181315	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2636461	1.00[AMR][1000 genomes]
rs73739030	1.00[AMR][1000 genomes]
rs73739033	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739039	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26641400-26659000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:26641400-26659000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:26643400-26658800	Weak transcription	Pancreas	Pancrea
4	chr6:26643400-26659000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:26643400-26659000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:26643400-26659000	Weak transcription	Aorta	Aorta
7	chr6:26643400-26659000	Weak transcription	Lung	lung
8	chr6:26643400-26659400	Weak transcription	Esophagus	oesophagus
9	chr6:26643400-26659400	Weak transcription	Gastric	stomach
10	chr6:26644600-26659000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:26649800-26659000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:26654400-26659000	Weak transcription	Fetal Thymus	thymus
13	chr6:26655000-26658800	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr6:26656200-26659400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:26656800-26658800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr6:26657400-26659200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
17	chr6:26657600-26658800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
18	chr6:26657600-26658800	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr6:26657600-26658800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr6:26657600-26658800	Genic enhancers	Cortex derived primary cultured neurospheres	brain
21	chr6:26657600-26658800	Enhancers	Right Ventricle	heart
22	chr6:26657600-26659000	Enhancers	Primary B cells from peripheral blood	blood
23	chr6:26657600-26659000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr6:26657800-26658800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:26657800-26659200	Flanking Active TSS	Dnd41	blood
26	chr6:26658000-26658800	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr6:26658000-26658800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr6:26658000-26658800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:26658000-26658800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr6:26658000-26658800	Enhancers	Fetal Brain Male	brain
31	chr6:26658000-26658800	Enhancers	Spleen	Spleen
32	chr6:26658000-26659000	Enhancers	Primary B cells from cord blood	blood
33	chr6:26658000-26659000	Enhancers	Primary hematopoietic stem cells	blood
34	chr6:26658000-26659000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr6:26658000-26659000	Enhancers	Thymus	Thymus
36	chr6:26658000-26659200	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr6:26658000-26659200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:26658000-26659200	Flanking Active TSS	Hela-S3	cervix
39	chr6:26658000-26659400	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr6:26658200-26658800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:26658200-26658800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr6:26658200-26658800	Enhancers	Liver	Liver
43	chr6:26658200-26658800	Enhancers	Fetal Intestine Large	intestine
44	chr6:26658200-26659000	Enhancers	Primary T cells from cord blood	blood
45	chr6:26658200-26659200	Flanking Active TSS	Duodenum Mucosa	Duodenum
46	chr6:26658200-26659600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
47	chr6:26658200-26660800	Active TSS	Right Atrium	heart
48	chr6:26658400-26658800	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:26658400-26658800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr6:26658400-26658800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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