Variant report

Variant	rs73739033
Chromosome Location	chr6:26600650-26600651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:26594524..26600977-chr6:27096034..27104390,19	K562	blood:
2	chr6:26575403..26577801-chr6:26599976..26601665,3	K562	blood:
3	chr6:26597702..26602573-chr6:27112472..27116781,7	MCF-7	breast:
4	chr6:26599522..26601282-chr6:26618255..26620897,2	K562	blood:
5	chr6:26330749..26333675-chr6:26599169..26602051,2	K562	blood:
6	chr6:26198217..26201079-chr6:26599187..26601123,2	K562	blood:
7	chr6:26593362..26600987-chr6:27097692..27106488,18	K562	blood:
8	chr6:26592995..26594553-chr6:26600001..26601767,2	K562	blood:
9	chr6:26598518..26601187-chr6:27104748..27107582,2	MCF-7	breast:
10	chr6:26599209..26601665-chr6:27091751..27095909,4	K562	blood:
11	chr6:26599541..26602825-chr6:26986557..26990306,3	K562	blood:
12	chr6:26599531..26602687-chr6:27093072..27095909,3	K562	blood:
13	chr6:26365273..26367962-chr6:26599757..26601303,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000124635	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000224843	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000238621	Chromatin interaction
ENSG00000186470	Chromatin interaction
ENSG00000198339	Chromatin interaction
ENSG00000215979	Chromatin interaction
ENSG00000197846	Chromatin interaction
ENSG00000197409	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000196866	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2636461	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2893859	1.00[EUR][1000 genomes]
rs73736861	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73738493	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73738495	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73738502	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73739003	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73739030	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739039	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26598000-26604800	Weak transcription	Aorta	Aorta
2	chr6:26598000-26606800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:26598200-26607800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:26598400-26601000	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:26598400-26601200	Strong transcription	Rectal Mucosa Donor 29	rectum
6	chr6:26598600-26600800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:26598600-26600800	Strong transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:26598600-26600800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:26598600-26600800	Strong transcription	Adipose Nuclei	Adipose
10	chr6:26598600-26600800	Strong transcription	Brain Anterior Caudate	brain
11	chr6:26598600-26600800	Strong transcription	Brain Cingulate Gyrus	brain
12	chr6:26598600-26600800	Strong transcription	Brain Inferior Temporal Lobe	brain
13	chr6:26598600-26600800	Strong transcription	Duodenum Mucosa	Duodenum
14	chr6:26598600-26600800	Strong transcription	Duodenum Smooth Muscle	Duodenum
15	chr6:26598600-26600800	Strong transcription	Fetal Intestine Large	intestine
16	chr6:26598600-26600800	Strong transcription	Fetal Muscle Leg	muscle
17	chr6:26598600-26600800	Strong transcription	Rectal Smooth Muscle	rectum
18	chr6:26598600-26600800	Strong transcription	K562	blood
19	chr6:26598600-26600800	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr6:26598600-26601000	Strong transcription	Stomach Smooth Muscle	stomach
21	chr6:26598600-26601200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:26598600-26601200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:26598600-26601200	Strong transcription	Brain Substantia Nigra	brain
24	chr6:26598600-26601200	Strong transcription	Fetal Lung	lung
25	chr6:26598600-26601200	Strong transcription	NHEK	skin
26	chr6:26598600-26601600	Strong transcription	Fetal Thymus	thymus
27	chr6:26598600-26601800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr6:26598600-26603200	Weak transcription	Fetal Brain Male	brain
29	chr6:26598800-26600800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr6:26598800-26600800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:26598800-26600800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:26598800-26600800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:26598800-26600800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:26598800-26600800	Strong transcription	Placenta	Placenta
35	chr6:26598800-26600800	Strong transcription	Left Ventricle	heart
36	chr6:26598800-26600800	Strong transcription	Lung	lung
37	chr6:26598800-26600800	Strong transcription	Skeletal Muscle Male	skeletal muscle
38	chr6:26598800-26601200	Strong transcription	Brain Hippocampus Middle	brain
39	chr6:26598800-26602800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr6:26599000-26600800	Strong transcription	Primary B cells from cord blood	blood
41	chr6:26599000-26600800	Strong transcription	Fetal Brain Female	brain
42	chr6:26599000-26601200	Strong transcription	HSMM	muscle
43	chr6:26599000-26601400	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr6:26599000-26601400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr6:26599000-26601600	Weak transcription	Psoas Muscle	Psoas
46	chr6:26599200-26600800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr6:26599200-26600800	Strong transcription	Primary B cells from peripheral blood	blood
48	chr6:26599200-26600800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr6:26599200-26600800	Genic enhancers	GM12878-XiMat	blood
50	chr6:26599200-26601200	Strong transcription	Primary T helper cells fromperipheralblood	blood

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