Variant report

Variant	rs73738495
Chromosome Location	chr6:26569966-26569967
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:38)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:38 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:26456964..26459608-chr6:26569874..26571893,2	K562	blood:
2	chr6:26320916..26324695-chr6:26568559..26572226,5	K562	blood:
3	chr6:26282822..26285948-chr6:26569563..26571358,3	K562	blood:
4	chr6:26156493..26160609-chr6:26566713..26572551,10	K562	blood:
5	chr6:26525492..26528021-chr6:26567722..26570111,2	MCF-7	breast:
6	chr6:26569878..26572045-chr6:26757682..26759933,2	K562	blood:
7	chr6:26303134..26304792-chr6:26569480..26571384,2	K562	blood:
8	chr6:26532740..26539448-chr6:26569667..26573975,11	K562	blood:
9	chr6:26341264..26342451-chr6:26569043..26570054,3	K562	blood:
10	chr6:26519454..26523332-chr6:26568814..26573401,9	K562	blood:
11	chr6:26568887..26570876-chr6:26573166..26576074,2	MCF-7	breast:
12	chr6:26568233..26570911-chr6:26596732..26598616,2	MCF-7	breast:
13	chr6:26568830..26570911-chr6:27113890..27117177,3	K562	blood:
14	chr6:26567325..26570025-chr6:26570280..26572074,2	MCF-7	breast:
15	chr6:26322266..26322838-chr6:26569151..26570082,2	K562	blood:
16	chr6:26569051..26574263-chr6:27058255..27061104,5	K562	blood:
17	chr6:26566413..26579648-chr6:26592370..26599609,38	K562	blood:
18	chr6:26318750..26323113-chr6:26568559..26574896,7	K562	blood:
19	chr6:26198264..26200984-chr6:26569161..26573441,3	K562	blood:
20	chr6:26536057..26540079-chr6:26569592..26573592,5	K562	blood:
21	chr6:26569658..26573509-chr6:27099375..27102190,3	K562	blood:
22	chr6:26325742..26329401-chr6:26567650..26570455,4	K562	blood:
23	chr6:26568519..26570551-chr6:27058352..27060839,2	K562	blood:
24	chr6:26215231..26219129-chr6:26568240..26572057,4	K562	blood:
25	chr6:26340332..26342039-chr6:26569832..26571583,2	K562	blood:
26	chr6:26519760..26523332-chr6:26568841..26572559,5	K562	blood:
27	chr6:26329307..26333799-chr6:26568024..26573999,9	K562	blood:
28	chr6:26340224..26344158-chr6:26569567..26573981,6	K562	blood:
29	chr6:26568882..26571175-chr6:26571456..26572979,2	K562	blood:
30	chr6:26569360..26571169-chr6:26582823..26585671,2	K562	blood:
31	chr6:26156671..26160280-chr6:26569301..26572551,5	K562	blood:
32	chr6:26537928..26538527-chr6:26569132..26569978,2	K562	blood:
33	chr6:26471319..26475410-chr6:26567164..26571952,5	K562	blood:
34	chr6:26325462..26328933-chr6:26567431..26570210,5	K562	blood:
35	chr6:26530786..26533089-chr6:26568633..26571101,2	K562	blood:
36	chr6:26216366..26219129-chr6:26567690..26570174,4	K562	blood:
37	chr6:26219518..26221470-chr6:26568147..26570701,2	K562	blood:
38	chr6:26568033..26580216-chr6:26588796..26603066,49	K562	blood:

No data

Variant related genes	Relation type
ENSG00000261353	Chromatin interaction
ENSG00000168274	Chromatin interaction
ENSG00000196866	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000197409	Chromatin interaction
ENSG00000146109	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000197846	Chromatin interaction
ENSG00000182952	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000220875	Chromatin interaction
ENSG00000168298	Chromatin interaction
ENSG00000112763	Chromatin interaction
ENSG00000199289	Chromatin interaction
ENSG00000187990	Chromatin interaction
ENSG00000228223	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000158406	Chromatin interaction
ENSG00000158373	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2636461	1.00[EUR][1000 genomes]
rs2893859	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73738493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73738502	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739003	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739030	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73739033	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26568000-26570000	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr6:26568000-26570000	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr6:26568000-26570200	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr6:26568200-26570000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:26568200-26570000	Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr6:26568200-26570000	Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr6:26568200-26570000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:26568200-26570000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:26568200-26570000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:26568200-26570000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:26568200-26570000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:26568200-26570000	Active TSS	Brain Cingulate Gyrus	brain
13	chr6:26568200-26570200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:26568200-26570200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:26568200-26570400	Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr6:26568400-26570000	Active TSS	Muscle Satellite Cultured Cells	--
17	chr6:26568400-26570000	Active TSS	NHLF	lung
18	chr6:26568400-26570200	Active TSS	Placenta	Placenta
19	chr6:26569000-26570000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:26569400-26570000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:26569400-26570000	Flanking Active TSS	HUVEC	blood vessel
22	chr6:26569400-26570000	Flanking Active TSS	NHEK	skin
23	chr6:26569600-26570000	Enhancers	Duodenum Mucosa	Duodenum
24	chr6:26569600-26570000	Flanking Active TSS	GM12878-XiMat	blood
25	chr6:26569600-26570200	Enhancers	Hela-S3	cervix
26	chr6:26569600-26570400	Flanking Active TSS	K562	blood
27	chr6:26569600-26571800	Weak transcription	Stomach Smooth Muscle	stomach
28	chr6:26569600-26571800	Weak transcription	HepG2	liver
29	chr6:26569600-26571800	Weak transcription	HSMM	muscle
30	chr6:26569600-26572000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr6:26569600-26572000	Weak transcription	Colon Smooth Muscle	Colon
32	chr6:26569600-26572000	Weak transcription	Esophagus	oesophagus
33	chr6:26569600-26572000	Weak transcription	Ovary	ovary
34	chr6:26569600-26572000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr6:26569600-26572000	Weak transcription	Rectal Smooth Muscle	rectum
36	chr6:26569600-26572000	Weak transcription	Right Ventricle	heart
37	chr6:26569600-26572000	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr6:26569600-26572000	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr6:26569600-26572200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr6:26569600-26572200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr6:26569600-26572200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr6:26569600-26572200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:26569600-26572200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr6:26569600-26572200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr6:26569600-26572200	Weak transcription	Aorta	Aorta
46	chr6:26569600-26572200	Weak transcription	Brain Germinal Matrix	brain
47	chr6:26569600-26572200	Weak transcription	Colonic Mucosa	Colon
48	chr6:26569600-26572200	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr6:26569600-26572200	Weak transcription	Fetal Lung	lung
50	chr6:26569600-26572200	Weak transcription	Pancreas	Pancrea

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