Variant report

Variant	rs73737868
Chromosome Location	chr6:45025656-45025657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs55820649	0.88[AFR][1000 genomes]
rs55956116	0.81[AFR][1000 genomes]
rs56007545	0.88[AFR][1000 genomes]
rs56199424	0.88[AFR][1000 genomes]
rs56200314	1.00[AFR][1000 genomes]
rs56288515	0.88[AFR][1000 genomes]
rs56907075	0.88[AFR][1000 genomes]
rs57999007	1.00[AFR][1000 genomes]
rs58237919	0.88[AFR][1000 genomes]
rs59048925	0.88[AFR][1000 genomes]
rs59227402	0.88[AFR][1000 genomes]
rs59994313	0.88[AFR][1000 genomes]
rs73735260	0.88[AFR][1000 genomes]
rs73735264	0.88[AFR][1000 genomes]
rs73735269	0.88[AFR][1000 genomes]
rs73735272	1.00[AFR][1000 genomes]
rs73735273	1.00[AFR][1000 genomes]
rs73735288	1.00[AFR][1000 genomes]
rs73735289	0.88[AFR][1000 genomes]
rs73735299	0.88[AFR][1000 genomes]
rs73735301	0.88[AFR][1000 genomes]
rs73737814	0.88[AFR][1000 genomes]
rs73737820	0.88[AFR][1000 genomes]
rs73737824	0.88[AFR][1000 genomes]
rs73737829	1.00[AFR][1000 genomes]
rs73737832	1.00[AFR][1000 genomes]
rs73737854	1.00[AFR][1000 genomes]
rs73737861	1.00[AFR][1000 genomes]
rs73737874	1.00[AFR][1000 genomes]
rs73737875	1.00[AFR][1000 genomes]
rs73737879	1.00[AFR][1000 genomes]
rs73737884	1.00[AFR][1000 genomes]
rs73737889	1.00[AFR][1000 genomes]
rs73737897	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	esv2758051	chr6:44879791-45056758	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2759423	chr6:44879791-45056758	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv885862	chr6:44890760-45083966	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv885863	chr6:44890760-45083966	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1023018	chr6:44925393-45152912	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv538212	chr6:44925393-45152912	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv603008	chr6:44958372-45081821	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv2762589	chr6:44982992-45044580	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv1018962	chr6:44996714-45038038	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv1024404	chr6:44996714-45039419	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv1026728	chr6:45001948-45126730	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv538213	chr6:45001948-45126730	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv885865	chr6:45012223-45102025	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
19	nsv492309	chr6:45020402-45233484	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45018000-45029000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:45019000-45028600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:45023400-45039200	Weak transcription	Dnd41	blood
4	chr6:45024400-45025800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:45024400-45030200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:45025000-45025800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:45025000-45026200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:45025200-45025800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:45025200-45025800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:45025200-45025800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:45025200-45025800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:45025200-45026000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:45025200-45026000	Enhancers	HepG2	liver
14	chr6:45025400-45025800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:45025400-45026000	Enhancers	Rectal Smooth Muscle	rectum
16	chr6:45025600-45025800	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr6:45025600-45026400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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