Variant report

Variant	rs73737889
Chromosome Location	chr6:45077666-45077667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs55820649	0.88[AFR][1000 genomes]
rs55956116	0.81[AFR][1000 genomes]
rs56007545	0.88[AFR][1000 genomes]
rs56199424	0.88[AFR][1000 genomes]
rs56200314	1.00[AFR][1000 genomes]
rs56288515	0.88[AFR][1000 genomes]
rs56907075	0.88[AFR][1000 genomes]
rs57999007	1.00[AFR][1000 genomes]
rs58237919	0.88[AFR][1000 genomes]
rs59048925	0.88[AFR][1000 genomes]
rs59227402	0.88[AFR][1000 genomes]
rs59994313	0.88[AFR][1000 genomes]
rs73735260	0.88[AFR][1000 genomes]
rs73735264	0.88[AFR][1000 genomes]
rs73735269	0.88[AFR][1000 genomes]
rs73735272	1.00[AFR][1000 genomes]
rs73735273	1.00[AFR][1000 genomes]
rs73735288	1.00[AFR][1000 genomes]
rs73735289	0.88[AFR][1000 genomes]
rs73735299	0.88[AFR][1000 genomes]
rs73735301	0.88[AFR][1000 genomes]
rs73737814	0.88[AFR][1000 genomes]
rs73737820	0.88[AFR][1000 genomes]
rs73737824	0.88[AFR][1000 genomes]
rs73737829	1.00[AFR][1000 genomes]
rs73737832	1.00[AFR][1000 genomes]
rs73737854	1.00[AFR][1000 genomes]
rs73737861	1.00[AFR][1000 genomes]
rs73737868	1.00[AFR][1000 genomes]
rs73737874	1.00[AFR][1000 genomes]
rs73737875	1.00[AFR][1000 genomes]
rs73737879	1.00[AFR][1000 genomes]
rs73737884	1.00[AFR][1000 genomes]
rs73737897	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv885862	chr6:44890760-45083966	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv885863	chr6:44890760-45083966	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1023018	chr6:44925393-45152912	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv538212	chr6:44925393-45152912	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv603008	chr6:44958372-45081821	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1026728	chr6:45001948-45126730	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv538213	chr6:45001948-45126730	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv885865	chr6:45012223-45102025	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv492309	chr6:45020402-45233484	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
14	nsv528130	chr6:45056086-45083966	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv1032906	chr6:45069368-45212863	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45071000-45077800	Weak transcription	HSMM	muscle
2	chr6:45073400-45083600	Weak transcription	Pancreas	Pancrea
3	chr6:45076600-45082800	Weak transcription	Dnd41	blood
4	chr6:45077000-45077800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:45077400-45077800	Enhancers	Primary T cells from cord blood	blood
6	chr6:45077400-45078000	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr6:45077400-45078000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr6:45077600-45078400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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