Variant report

Variant	rs73738311
Chromosome Location	chr6:45931663-45931664
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45908480..45910653-chr6:45930951..45933315,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs56287981	0.81[AFR][1000 genomes]
rs57394612	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73738312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73738313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73738314	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73738324	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv428482	chr6:45926644-46050182	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45918800-45938400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:45920000-45934800	Weak transcription	Colonic Mucosa	Colon
3	chr6:45924600-45932400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:45924600-45934400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:45926800-45935000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:45927800-45932800	Weak transcription	NH-A	brain
7	chr6:45927800-45933000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:45928000-45933000	Weak transcription	HMEC	breast
9	chr6:45928200-45936400	Weak transcription	Fetal Kidney	kidney
10	chr6:45928400-45934200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:45928600-45931800	Weak transcription	Small Intestine	intestine
12	chr6:45928600-45933600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr6:45928600-45934200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:45928600-45934200	Weak transcription	Lung	lung
15	chr6:45928600-45934200	Weak transcription	Right Ventricle	heart
16	chr6:45929600-45933400	Weak transcription	Placenta	Placenta
17	chr6:45930600-45933000	Weak transcription	Fetal Heart	heart
18	chr6:45930800-45932000	Weak transcription	Psoas Muscle	Psoas
19	chr6:45930800-45932000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr6:45931200-45932600	Enhancers	Fetal Intestine Large	intestine
21	chr6:45931400-45932000	Weak transcription	Left Ventricle	heart
22	chr6:45931400-45934400	Weak transcription	Right Atrium	heart

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