Variant report

Variant	rs73738314
Chromosome Location	chr6:45934863-45934864
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57394612	1.00[AMR][1000 genomes]
rs73738311	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73738312	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73738313	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73738324	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv428482	chr6:45926644-46050182	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45918800-45938400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:45926800-45935000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:45928200-45936400	Weak transcription	Fetal Kidney	kidney
4	chr6:45932000-45936200	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr6:45932600-45935000	Enhancers	HSMM	muscle
6	chr6:45932600-45937800	Weak transcription	Fetal Intestine Large	intestine
7	chr6:45932800-45935000	Enhancers	HSMMtube	muscle
8	chr6:45933000-45935400	Enhancers	Fetal Heart	heart
9	chr6:45933400-45935000	Enhancers	Placenta Amnion	Placenta Amnion
10	chr6:45933400-45935600	Enhancers	Placenta	Placenta
11	chr6:45933600-45941400	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr6:45934200-45935400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:45934200-45935800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:45934200-45936000	Enhancers	Left Ventricle	heart
15	chr6:45934200-45936200	Enhancers	Right Ventricle	heart
16	chr6:45934400-45935000	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr6:45934400-45935600	Enhancers	Psoas Muscle	Psoas
18	chr6:45934400-45937200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr6:45934400-45937200	Weak transcription	Small Intestine	intestine
20	chr6:45934400-45938600	Enhancers	Right Atrium	heart
21	chr6:45934600-45935000	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr6:45934600-45936800	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr6:45934600-45937600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:45934800-45935000	Enhancers	Lung	lung
25	chr6:45934800-45935200	Enhancers	Colonic Mucosa	Colon
26	chr6:45934800-45935200	Enhancers	Duodenum Mucosa	Duodenum
27	chr6:45934800-45935200	Enhancers	HMEC	breast
28	chr6:45934800-45936800	Weak transcription	Ovary	ovary
29	chr6:45934800-45937400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:45934800-45937600	Weak transcription	Fetal Intestine Small	intestine

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