Variant report

Variant	rs73738333
Chromosome Location	chr6:45978639-45978640
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:45978565..45981449-chr6:45989773..45991611,2	K562	blood:
2	chr6:45972108..45974934-chr6:45976922..45979622,2	K562	blood:
3	chr10:12382244..12382792-chr6:45978181..45978798,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55709318	1.00[AMR][1000 genomes]
rs55736283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72857000	0.94[AFR][1000 genomes]
rs73738336	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv428482	chr6:45926644-46050182	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv885867	chr6:45936223-45982976	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1025846	chr6:45955173-46047269	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45968000-45979400	Enhancers	Right Ventricle	heart
2	chr6:45969400-45978800	Weak transcription	Spleen	Spleen
3	chr6:45973200-45981600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:45976000-45981400	Enhancers	Psoas Muscle	Psoas
5	chr6:45977400-45979000	Enhancers	Primary T cells fromperipheralblood	blood
6	chr6:45977400-45979000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:45977400-45979000	Enhancers	Right Atrium	heart
8	chr6:45977400-45979200	Enhancers	Lung	lung
9	chr6:45977400-45980200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:45977600-45979000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr6:45977600-45979000	Weak transcription	Fetal Heart	heart
12	chr6:45977600-45979200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr6:45977800-45978800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:45977800-45979000	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr6:45977800-45980000	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr6:45978000-45978800	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr6:45978000-45978800	Enhancers	GM12878-XiMat	blood
18	chr6:45978000-45979000	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr6:45978000-45979000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr6:45978000-45979000	Enhancers	Left Ventricle	heart
21	chr6:45978000-45979800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr6:45978000-45980800	Enhancers	Small Intestine	intestine
23	chr6:45978200-45979600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:45978200-45979800	Enhancers	Placenta	Placenta
25	chr6:45978200-45979800	Enhancers	Dnd41	blood
26	chr6:45978200-45980200	Enhancers	Primary B cells from peripheral blood	blood
27	chr6:45978400-45978800	Enhancers	Duodenum Mucosa	Duodenum
28	chr6:45978400-45979000	Enhancers	Primary T cells from cord blood	blood
29	chr6:45978400-45979000	Enhancers	Fetal Intestine Large	intestine
30	chr6:45978400-45979200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:45978400-45979200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
32	chr6:45978400-45979400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
33	chr6:45978400-45979400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
34	chr6:45978400-45979600	Flanking Active TSS	Hela-S3	cervix
35	chr6:45978400-45979800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
36	chr6:45978400-45979800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
37	chr6:45978400-45979800	Enhancers	Stomach Mucosa	stomach
38	chr6:45978400-45980000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr6:45978600-45978800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
40	chr6:45978600-45978800	Enhancers	NHLF	lung
41	chr6:45978600-45979200	Flanking Active TSS	Colonic Mucosa	Colon
42	chr6:45978600-45979400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr6:45978600-45979800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
44	chr6:45978600-45981600	Enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links