Variant report

Variant	rs55709318
Chromosome Location	chr6:45811983-45811984
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45808947..45810769-chr6:45811538..45813152,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs55736283	1.00[AMR][1000 genomes]
rs73735420	1.00[AMR][1000 genomes]
rs73735452	1.00[AMR][1000 genomes]
rs73735454	1.00[AMR][1000 genomes]
rs73738333	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45805000-45812400	Weak transcription	Right Atrium	heart
2	chr6:45807000-45812000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:45807600-45812400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:45810800-45812400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr6:45810800-45814400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:45811000-45812600	Enhancers	Liver	Liver
7	chr6:45811200-45812000	Enhancers	HepG2	liver
8	chr6:45811200-45813000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:45811200-45813000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:45811200-45814000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:45811200-45814200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:45811400-45812000	Enhancers	Dnd41	blood
13	chr6:45811400-45812600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:45811400-45812800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:45811400-45814400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:45811400-45814400	Enhancers	Osteobl	bone
17	chr6:45811400-45814600	Enhancers	Hela-S3	cervix
18	chr6:45811600-45812200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:45811600-45812200	Enhancers	NHDF-Ad	bronchial
20	chr6:45811600-45812400	Enhancers	HSMMtube	muscle
21	chr6:45811600-45812600	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links