Variant report

Variant	rs73735420
Chromosome Location	chr6:45631526-45631527
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55709318	1.00[AMR][1000 genomes]
rs73735412	1.00[AMR][1000 genomes]
rs73735452	1.00[AMR][1000 genomes]
rs73735454	1.00[AMR][1000 genomes]
rs73737442	1.00[AMR][1000 genomes]
rs73737464	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45626200-45632600	Weak transcription	HSMMtube	muscle
2	chr6:45629600-45633200	Weak transcription	Dnd41	blood
3	chr6:45630400-45632400	Weak transcription	HSMM	muscle
4	chr6:45630400-45635000	Weak transcription	NHDF-Ad	bronchial
5	chr6:45630600-45632000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
6	chr6:45630800-45631600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
7	chr6:45630800-45631600	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
8	chr6:45630800-45631600	Bivalent Enhancer	Fetal Brain Male	brain
9	chr6:45630800-45631800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
10	chr6:45630800-45631800	Bivalent Enhancer	Lung	lung
11	chr6:45630800-45632000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
12	chr6:45630800-45632000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
13	chr6:45630800-45632000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:45631000-45631600	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:45631000-45631600	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
16	chr6:45631000-45631600	Active TSS	Gastric	stomach
17	chr6:45631000-45631800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:45631000-45631800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:45631000-45631800	Enhancers	Pancreas	Pancrea
20	chr6:45631000-45631800	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
21	chr6:45631000-45632000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
22	chr6:45631000-45632000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
23	chr6:45631000-45632000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:45631000-45632000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:45631000-45632000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
26	chr6:45631000-45632000	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
27	chr6:45631000-45634200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr6:45631000-45635600	Enhancers	NH-A	brain
29	chr6:45631200-45631600	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:45631200-45631600	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
31	chr6:45631200-45631600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:45631200-45631600	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
33	chr6:45631200-45631600	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
34	chr6:45631200-45631600	Bivalent Enhancer	Stomach Mucosa	stomach
35	chr6:45631200-45631600	Active TSS	NHEK	skin
36	chr6:45631200-45631600	Active TSS	NHLF	lung
37	chr6:45631200-45631800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
38	chr6:45631200-45631800	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
39	chr6:45631200-45631800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr6:45631200-45631800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr6:45631200-45631800	Bivalent Enhancer	Liver	Liver
42	chr6:45631200-45631800	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
43	chr6:45631200-45631800	Flanking Bivalent TSS/Enh	Right Ventricle	heart
44	chr6:45631200-45631800	Enhancers	Spleen	Spleen
45	chr6:45631200-45632000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
46	chr6:45631200-45632000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
47	chr6:45631200-45632000	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr6:45631200-45632000	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
49	chr6:45631200-45632000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr6:45631200-45632000	Active TSS	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links